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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcttcattcattatccatcgcttgttggtttttcacccgcgattgtttgcagGTTGTGGAAGTTAACGTTCTCTCGGAGAAAGCAGGCTCGGACAATCCTCACAATAACTCGTTTTACCCGACCGAGACTGTGCTAAAGTCTGAGTTACAGG

Basic information

species Selaginella moellendorffii
transcript EFJ19345
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169072736|gb|FE482273.1|FE482273
EST:     CCAGAATGAATATGGCTGTCGACTGCGTCCCTGGAGAACAAGCAAACCAG                         GTTGTGGAAGTTAACGTTCTCTCGGAGAAAGCAGGCTCGGACAATCCTCAC
genomic: CCAGAATGAATATGGCTGTCGACTGCGTCCCTGGAGAACAAGCAAACCAGgttcttcatt ... ttgtttgcagGTTGTGGAAGTTAACGTTCTCTCGGAGAAAGCAGGCTCGGACAATCCTCAC
EST: gi|169092717|gb|FE493685.1|FE493685
EST:     AGAATGAATATGGCTGTCGACTGCGTCCCTGGAGAACAAGCAAACCAG                         GTTGTGGAAGTTAACGTTCTCTCGGAGAAAGCAGGCTCGGACAATCCTCAC
genomic: AGAATGAATATGGCTGTCGACTGCGTCCCTGGAGAACAAGCAAACCAGgttcttcatt ... ttgtttgcagGTTGTGGAAGTTAACGTTCTCTCGGAGAAAGCAGGCTCGGACAATCCTCAC
EST: gi|169076431|gb|FE486033.1|FE486033
EST:     CCAGAATGAATATGGCTGTCGACTGCGTCCCTGGAGAACAAGCAAACCAG                         GTTGTGGAAGTTAACGTTCTCTCGGAGAAAGCAGGCTCGGACAATCCTCAC
genomic: CCAGAATGAATATGGCTGTCGACTGCGTCCCTGGAGAACAAGCAAACCAGgttcttcatt ... ttgtttgcagGTTGTGGAAGTTAACGTTCTCTCGGAGAAAGCAGGCTCGGACAATCCTCAC
EST: gi|169069289|gb|FE480048.1|FE480048
EST:     CCAGAATGAATATGGCTGTCGACTGCGTCCCTGGAGAACAAGCAAACCAG                         GTTGTGGAAGTTAACGTTCTCTCGGAGAAAGCAGGCTCGGACAATCCTCAC
genomic: CCAGAATGAATATGGCTGTCGACTGCGTCCCTGGAGAACAAGCAAACCAGgttcttcatt ... ttgtttgcagGTTGTGGAAGTTAACGTTCTCTCGGAGAAAGCAGGCTCGGACAATCCTCAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttcttcattcattatccatcgcttgttggtttttcacccgcgattgtttgcagGTTGTGGAAGTTAACGTTCTCTCGGAGAAAGCAGGCTCGGACAATCCTCACAATAACTCGTTTTACCCGACCGAGACTGTGCTAAAGTCTGAGTTACAGG
         attcattat  TA-rich tract