1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtacgcaagactttttttttttttctctccactttgtgtcactgtctcttaagtactgattcccgggtccatccagGTGTTAGATGGCAAACCTTACAACCGAAAGTGCGACGTCTACAGCTTTGGAATCTGCCTGTGGGAGATTTACTGCTGTGACATGCCTTTTGCGGACTACA
species | Selaginella moellendorffii |
transcript | EFJ19310 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CCAAAGACATGACCGGCGAAACTGGCACGGTGGGATACATGGCTCCTGAG GTGTTAGATGGCAAACCTTACAACCGAAAGTGCGACGTCTACAGCTTTGGAEST: gi|169061099|gb|FE470105.1|FE470105
genomic: CCAAAGACATGACCGGCGAAACTGGCACGGTGGGATACATGGCTCCTGAGgtacgcaaga ... gtccatccagGTGTTAGATGGCAAACCTTACAACCGAAAGTGCGACGTCTACAGCTTTGGA
EST: CCAAAGACATGACCGGCGAAACTGGCACGGTGGGATACATGGCTCCTGAG GTGTTAGATGGCAAACCTTACAACCGAAAGTGCGACGTCTACAGCTTTGGA
genomic: CCAAAGACATGACCGGCGAAACTGGCACGGTGGGATACATGGCTCCTGAGgtacgcaaga ... gtccatccagGTGTTAGATGGCAAACCTTACAACCGAAAGTGCGACGTCTACAGCTTTGGA
tttctctccactttgtgtcactgtctcttaagtactgattcccgggtccatccagGTGTTAGATGGCAAACCTTACAACCGAAAGTGCGACGTCTACAGCTTTGGAATCTGCCTGTGGGAGATTTACTGCTGTGACATGCCTTTTGCGGACTACA
tactgat putative branch site (score: 26)
tccatcc putative PPT
ttaagta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgcaagactttttttttttttctctccactttgtgtcactgtctcttaagtactgattcccgggtccatccagGTGTTAGATGGCAAACCTTACAACCGAAAGTGCGACGTCTACAGCTTTGGAATCTGCCTGTGGGAGATTTACTGCTGTGACATGCCTTTTGCGGACTACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT