1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgagttttttcgtccttcgttgtacctttttgtttcttttcgccgcttctttttttttcttctactcttttcatttgttcgtttgctttgagttacacttgcagGCTTGACTATCTTCACTCTAAGAAGATAGTTCACAGGGACGTGAAATCGGAGAATATGCTGCTTGACAATAAGCGGCGAGTTAAAATCGCCGACTTTGGG
species | Selaginella moellendorffii |
transcript | EFJ19310 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGCTCCGGCTCAAGGTCGTGATCCAGCTAGCCTTGGACCTTTCCAGAGG GCTTGACTATCTTCACTCTAAGAAGATAGTTCACAGGGACGTGAAATCGGAEST: gi|169102053|gb|FE505757.1|FE505757
genomic: AGCTCCGGCTCAAGGTCGTGATCCAGCTAGCCTTGGACCTTTCCAGAGGgtgagttttt ... acacttgcagGCTTGACTATCTTCACTCTAAGAAGATAGTTCACAGGGACGTGAAATCGGA
EST: AAGCTCCGGCTCAAGGTCGTGATCCAGCTAGCCTTGGACCTTTCCAGAGG GCTTGACTATCTTCACTCTAAGAAGATAGTTCACAGGGACGTGAAATCGGAEST: gi|169061100|gb|FE470106.1|FE470106
genomic: AAGCTCCGGCTCAAGGTCGTGATCCAGCTAGCCTTGGACCTTTCCAGAGGgtgagttttt ... acacttgcagGCTTGACTATCTTCACTCTAAGAAGATAGTTCACAGGGACGTGAAATCGGA
EST: AAGCTCCGGCTCAAGGTCGTGATCCAGCTAGCCTTGGACCTTTCCAGAGG GCTTGACTATCTTCACTCTAAGAAGATAGTTCACAGGGACGTGAAATCGGAEST: gi|169093217|gb|FE494211.1|FE494211
genomic: AAGCTCCGGCTCAAGGTCGTGATCCAGCTAGCCTTGGACCTTTCCAGAGGgtgagttttt ... acacttgcagGCTTGACTATCTTCACTCTAAGAAGATAGTTCACAGGGACGTGAAATCGGA
EST: AAGCTCCGGCTCAAGGTCGTGATCCAGCTAGCCTTGGACCTTTCCAGAGG GCTTGACTATCTTCACTCTAAGAAGATAGTTCACAGGGACGTGAAATCGGAEST: gi|169061099|gb|FE470105.1|FE470105
genomic: AAGCTCCGGCTCAAGGTCGTGATCCAGCTAGCCTTGGACCTTTCCAGAGGgtgagttttt ... acacttgcagGCTTGACTATCTTCACTCTAAGAAGATAGTTCACAGGGACGTGAAATCGGA
EST: GGCTCAAGGTCGTGATCCAGCTAGCCTTGGACCTTTCCAGAGG GCTTGACTATCTTCACTCTAAGAAGATAGTTCACAGGGACGTGAAATCGGAEST: gi|169041047|gb|FE447656.1|FE447656
genomic: GGCTCAAGGTCGTGATCCAGCTAGCCTTGGACCTTTCCAGAGGgtgagttttt ... acacttgcagGCTTGACTATCTTCACTCTAAGAAGATAGTTCACAGGGACGTGAAATCGGA
EST: AAGCTCCGGCTCAAGGTCGTGATCCAGCTAGCCTTGGACCTTTCCAGAGG GCTTGACTATCTTCACTCTAAGAAGATAGTTCACAGGGACGTGAAATCGGA
genomic: AAGCTCCGGCTCAAGGTCGTGATCCAGCTAGCCTTGGACCTTTCCAGAGGgtgagttttt ... acacttgcagGCTTGACTATCTTCACTCTAAGAAGATAGTTCACAGGGACGTGAAATCGGA
tttttttttcttctactcttttcatttgttcgtttgctttgagttacacttgcagGCTTGACTATCTTCACTCTAAGAAGATAGTTCACAGGGACGTGAAATCGGAGAATATGCTGCTTGACAATAAGCGGCGAGTTAAAATCGCCGACTTTGGG
ttttcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagttttttcgtccttcgttgtacctttttgtttcttttcgccgcttctttttttttcttctactcttttcatttgttcgtttgctttgagttacacttgcagGCTTGACTATCTTCACTCTAAGAAGATAGTTCACAGGGACGTGAAATCGGAGAATATGCTGCTTGACAATAAGCGGCGAGTTAAAATCGCCGACTTTGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT