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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACCATGCTAGCATGGATCCACAAGAAAGGAACAGGGTGCAACGTATGTGGAGTAAGGACGAAATCAATATAATTTGTGCCACTGTGGCATTCGGCATGGgtaagcccgcataatactaaactgcgtgagcttcacaggaattttgacag

Basic information

species Selaginella moellendorffii
transcript EFJ17581
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ17581 (Selaginella moellendorffii), 5'ss of exon 8
lower sequence: GLYMA08G20070.1 (Glycine max), 5'ss of exon 17
TACCATGCTAGCATGGATCCACAAGAAAGGAACAGGGTGCAACGTATGTGGAGTAAGGACGAAATCAATATAATTTGTGCCACTGTGGCATTCGGCATGGgtaagcccgcataatactaaactgcgtgagcttcacaggaattttgacag----------------------------
|| |||| ||||||||| ||     || |       || |||     |||||| || || || ||||||||||||||||| ||||||||||| || |||||||      | |  |    | | || ||  || ||| ||    ||||  |                            
TATCATGGTAGCATGGACCCTGCTCAACGTGCTTCTGTTCAAAAGCAGTGGAGCAAAGATGAGATCAATATAATTTGTGCTACTGTGGCATTTGGAATGGgtatatttacttccttgcta-cggcttg--ctgcactggttaattgaatgggatcatattttaaagttggtatttcag

upper sequence: EFJ17581 (Selaginella moellendorffii), 5'ss of exon 8
lower sequence: AT1G10930.1 (Arabidopsis thaliana), 5'ss of exon 15
TACCATGCTAGCATGGATCCACAAGAAAGGAACAGGGTGCAACGTATGTGGAGTAAGGACGAAATCAATATAATTTGTGCCACTGTGGCATTCGGCATGGgtaagcccgcataatactaa-actgcgtgagcttcacaggaattttgacag----------------------
|||||||  || ||||| ||  |  || |   |    | ||       ||||| |||||||||||||||||||| ||||| ||||||||||| || |||||||   | |  |  | ||||   ||  | |  |       ||| |||                          
TACCATGGCAGTATGGAGCCTGAGCAACGTGCCTTTATACAGACACAATGGAGCAAGGACGAAATCAATATAATATGTGCTACTGTGGCATTTGGAATGGgta---ctggtttttgctaatgttgttttaattcattgaaaatgttgctgcccattaacattgcacatttcag

upper sequence: EFJ17581 (Selaginella moellendorffii), 5'ss of exon 8
lower sequence: AT1G60930.1 (Arabidopsis thaliana), 5'ss of exon 15
TACCATGCTAGCATGGATCCACAAGAAAGGAACAGGGTGCAACGTATGTGGAGTAAGGACGAAATCAATATAATTTGTGCCACTGTGGCATTCGGCATGGgtaa------gcccgcataata-----ctaaactgcgtgagcttcacag-----gaattttgacag-----
|||||||  || ||||||||     || |   |   || ||       ||||| ||||| |||||||||||||| ||||| || |||||||| || ||||||||      | |    | |||      |  | ||  |||  ||  | |      ||  |||| |      
TACCATGGCAGTATGGATCCTGGTAAACGTGCCTTTGTACAGAAACAATGGAGCAAGGATGAAATCAATATAATATGTGCTACAGTGGCATTTGGAATGGgtaattaatggtctctgttatagccactttgattgattgaagtttgctgcctgctaacgttgatatttcag

upper sequence: EFJ17581 (Selaginella moellendorffii), 5'ss of exon 8
lower sequence: PP1S243_58V6.1 (Physcomitrella patens), 5'ss of exon 15
TACCATGCTAGCATGGATCCACAAGAAAGGAACAGGGTGCAACGTATGTGGAGTAAGGACGAAATCAATATAATTTGTGCCACTGTGGCATTCGGCATGGgta-agcccgcataatactaaactgcgtgagcttcacaggaattttgacag-------------------------------------------------------------------------
|| ||||     ||||||||| | ||  |||     |||||||| ||||||||||| || ||| |||||||||| ||||| || || || || |||||||||| |   | | |   |       | |  |  |||  || |    | ||                                                                           
TATCATGGACAAATGGATCCAGACGAGCGGAGTTATGTGCAACGCATGTGGAGTAAAGATGAAGTCAATATAATATGTGCAACGGTTGCTTTTGGCATGGgtatatatctccttgcaacctcaagagaaaatttcttagcagcccttactcagcagatcacattatatcatttttcgtgattttgagaaggtgttgttaactccgcattgataatgggtgatag