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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTGGAGAACTTGCACAGGAGAAGACTCTTGGCACGTATTGTCATCGACGAGGCACATTGTGTCAGCCAGTGGGGTCATGACTTTCGTCCAGATTACCAGgtaggaaatattttgtgttacatctagctcatgacgttttcttcaatgcggcaag

Basic information

species Selaginella moellendorffii
transcript EFJ17581
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ17581 (Selaginella moellendorffii), 5'ss of exon 5
lower sequence: LOC_Os04g35420.1 (Oryza sativa), 5'ss of exon 11
CTTGGAGAACTTGCACAGGAGAAGACTCTTGGCACGTATTGTCATCGACGAGGCACATTGTGTCAGCCAGTGGGGTCATGACTTTCGTCCAGATTACCAGgta----------ggaaata---ttttgtgttacatctagctcatgacgttttc-ttcaatgcggcaag------
 ||||| || ||  |   | || | |   |  |  | |||||||| || || || || ||||| ||||||||||||||||| || || || ||||||||||||          ||||  |   |||  ||||| ||  |  | |  || ||||  | || | |   |        
ATTGGAAAATTTATATTCGCGAGGCCATCTCTCTAGAATTGTCATTGATGAAGCCCACTGTGTTAGCCAGTGGGGTCATGATTTCCGACCTGATTACCAGgtactttctgtcaggaagcagattttcatgttaaat--aattgacaaccttttaatccagttctttatccatcag

upper sequence: EFJ17581 (Selaginella moellendorffii), 5'ss of exon 5
lower sequence: GRMZM2G319573_T01 (Zea mays), 5'ss of exon 11
CTTGGAGAACTTGCACAGGAGAAGACTCTTGGCACGTATTGTCATCGACGAGGCACATTGTGTCAGCCAGTGGGGTCATGACTTTCGTCCAGATTACCAGgta-------------ggaaatattttgtgttacatctagc----tcatgacgt--tttcttcaatgcggcaag
 ||||| || ||  |      | | | | |  |  | ||||| || || || || |||||||| |||||||||||||||||||| ||||| |||||| |||||             ||| |  ||    |||| ||         || | | ||   || | | ||    ||  
ATTGGACAATTTAAATTCACAAGGGCACCTTTCTAGAATTGTTATTGATGAAGCTCATTGTGTAAGCCAGTGGGGTCATGACTTCCGTCCTGATTACAAGgtatttctatctgacaggagacgttcatggttaaattagatgacttcttaatgtaggttttactatctatcag-

upper sequence: EFJ17581 (Selaginella moellendorffii), 5'ss of exon 5
lower sequence: AT1G10930.1 (Arabidopsis thaliana), 5'ss of exon 12
CTTGGAGAACTTGCACAGGAGAAGACTCTTGGCACGTATTGTCATCGACGAGGCACATTGTGTCAGCCAGTGGGGTCATGACTTTCGTCCAGATTACCAGgtaggaaatattttgtgttacatctagctcatgacgttttcttcaatgcggcaag-----------------------------------------
  |||| |||||  |     |  |  |  | || ||  |||| || || || || |||||||| ||||| ||||| ||||||||||| ||||| ||||||||  |    ||     | | |||  | |  |     ||   ||| | |   ||                                           
TCTGGAAAACTTAAATTCTCGTGGTTTGCTTGCTCGGTTTGTTATTGATGAAGCTCATTGTGTGAGCCAATGGGGACATGACTTTCGACCAGACTACCAGgttaggc-catcaaaagcttcatacaacataccctcttactttcga-gaaacataattgtccttttttacgtaccaaatttttgtggaatacacag

upper sequence: EFJ17581 (Selaginella moellendorffii), 5'ss of exon 5
lower sequence: PP1S243_58V6.1 (Physcomitrella patens), 5'ss of exon 12
CTTGGAGAACTTGCACAGGAGAAGACTCTTGGCACGTATTGTCATCGACGAGGCACATTGTGTCAGCCAGTGGGGTCATGACTTTCGTCCAGATTACCAGgtaggaaatattttgtgttacatctagctcatgacgttttc---ttcaatgcggcaag-------------------------------------------------------------------------
  |    | | || |       ||| |  | || || |||||  | || || || || ||||| ||||| ||||||||||| |||||||| ||||| |||||| |     ||||    | ||  |  | ||||   ||  |   ||  ||| || |                                                                           
TCTTACAAGCCTGTATGATCAGAGATTACTTGCTCGAATTGTGGTTGATGAAGCTCACTGTGTAAGCCAATGGGGTCATGATTTTCGTCCTGATTATCAGgtatgt----ttttaacctgcacttgccacatggttttaccatgttttatgtggtatttgagtgtattcaagacatgcgatgacgttggaatcatgttgttatatctacttacaaacatctatgtgtacag