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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcttttttccatataaaaatgttgctaaatggttttttctgtagCTCCCAGCTATTTGCTGCCCGGGTGTGACTCTGGTAGTCTGTCCTCTTGTCTCTCTTATTATGGACCAAATAATGCATCTCTCACAG

Basic information

species Selaginella moellendorffii
transcript EFJ17581
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ17581 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: PP1S243_58V6.1 (Physcomitrella patens), 3'ss of exon 9
-------------------------------------gtatgcttttt-------tccatataaaaatg-----ttgctaaat---ggttttttctgtagCTCCCAGCTATTTGCTGCCCGGGTGTGACTCTGGTAGTCTGTCCTCTTGTCTCTCTTATTATGGACCAAATAATGCATCTCTCACAG
                                     |||| || |         |    || |  |||     || ||||||       ||||  | |||| || |||||||| |   | || ||||| || || |||| ||||||||||||||| |||||||||||||| ||||| || ||| ||
acattgtcatttccacacgaaagatatattattgagagtatactctcagatgtagttttcatgagtatgcttctttactaaattcaacaatttttggcagCTACCTGCTATTTGTTCTGCAGGGGTGACACTTGTGGTCTCTCCTCTTGTCTCTCTCATTATGGACCAAATTATGCACCTTTCAGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtatgcttttttccatataaaaatgttgctaaatggttttttctgtagCTCCCAGCTATTTGCTGCCCGGGTGTGACTCTGGTAGTCTGTCCTCTTGTCTCTCTTATTATGGACCAAATAATGCATCTCTCACAG
                                 tgctaaa  putative branch site (score: 2)
                                           ttttttctgt  putative PPT
             ttttttccatataaaa  TA-rich tract