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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGATCCGCGCATCCGGATGATACGTCGTCGATTGTGAACGACCGTGTCAAGGGGAAGCTGGCAGTCACTCGAGCGTTTGGCGCTGGGTATCTCAAACAGgttagtatcttttctctctttttcttttcttctttttccaacagggtattcatactttctgttttgtttgatgcag

Basic information

species Selaginella moellendorffii
transcript EFJ13137
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169098747|gb|FE500259.1|FE500259
EST:     AGGGGAAGCTGGCAGTCACTCGAGCGTTTGGCGCTGGGTATCTCAAACAG                         CCAAAGTGGAACGATGCATTGCTGGAGGTGTTTCGTGTCCAATTTGTGGGG
genomic: AGGGGAAGCTGGCAGTCACTCGAGCGTTTGGCGCTGGGTATCTCAAACAGgttagtatct ... tttgatgcagCCAAAGTGGAACGATACATTGCTGGAGGTGTTTCGCGTCCAATTTGTGGGG
EST: gi|169021499|gb|FE428573.1|FE428573
EST:     AGGGGAAGCTGGCAGTCACTCGAGCGTTTGGCGCTGGGTATCTCAAACAG                         CCAAAGTGGAACGATACATTGCTGGAGGTGTTTCGCGTCCAATTTGTGGGG
genomic: AGGGGAAGCTGGCAGTCACTCGAGCGTTTGGCGCTGGGTATCTCAAACAGgttagtatct ... tttgatgcagCCAAAGTGGAACGATACATTGCTGGAGGTGTTTCGCGTCCAATTTGTGGGG
EST: gi|169051534|gb|FE459769.1|FE459769
EST:     AGGGGAAGCTGGCAGTCACTCGAGCGTTTGGCGCTGGGTATCTCAAACAG                         CCAAAGTGGAACGATACATTGCTGGAGGTGTTTCGCGTCCAATTTGTGGGG
genomic: AGGGGAAGCTGGCAGTCACTCGAGCGTTTGGCGCTGGGTATCTCAAACAGgttagtatct ... tttgatgcagCCAAAGTGGAACGATACATTGCTGGAGGTGTTTCGCGTCCAATTTGTGGGG
EST: gi|169025176|gb|FE434113.1|FE434113
EST:     AGGGGAAGCTGGCAGTCACTCGAGCGTTTGGCGCTGGGTATCTCAAACAG                         CCAAAGTGGAACGATGCATTGCTGGAGGTGTTTCGTGTCCAATTTGTGGGG
genomic: AGGGGAAGCTGGCAGTCACTCGAGCGTTTGGCGCTGGGTATCTCAAACAGgttagtatct ... tttgatgcagCCAAAGTGGAACGATACATTGCTGGAGGTGTTTCGCGTCCAATTTGTGGGG
EST: gi|169057607|gb|FE463658.1|FE463658
EST:     AGGGGAAGCTGGCAGTCACTCGAGCGTTTGGCGCTGGGTATCTCAAACAG                         CCAAAGTGGAACGATACATTGCTGGAGGTGTTTCGCGTCCAATTTGTGGGG
genomic: AGGGGAAGCTGGCAGTCACTCGAGCGTTTGGCGCTGGGTATCTCAAACAGgttagtatct ... tttgatgcagCCAAAGTGGAACGATACATTGCTGGAGGTGTTTCGCGTCCAATTTGTGGGG
EST: gi|169059192|gb|FE467194.1|FE467194
EST:     AGGGGAAGCTGGCAGTCACTCGAGCGTTTGGCGCTGGGTATCTCAAACAG                         CCAAAGTGGAACGATGCATTGCTGGAGGTGTTTCGTGTCCAATTTGTGGGG
genomic: AGGGGAAGCTGGCAGTCACTCGAGCGTTTGGCGCTGGGTATCTCAAACAGgttagtatct ... tttgatgcagCCAAAGTGGAACGATACATTGCTGGAGGTGTTTCGCGTCCAATTTGTGGGG
EST: gi|169057763|gb|FE465257.1|FE465257
EST:     AGGGGAAGCTGGCAGTCACTCGAGCGTTTGGCGCTGGGTATCTCAAACAG                         CCAAAGTGGAACGATGCATTGCTGGAGGTGTTTCGTGTCCAATTTGTGGGG
genomic: AGGGGAAGCTGGCAGTCACTCGAGCGTTTGGCGCTGGGTATCTCAAACAGgttagtatct ... tttgatgcagCCAAAGTGGAACGATACATTGCTGGAGGTGTTTCGCGTCCAATTTGTGGGG
EST: gi|169021500|gb|FE428574.1|FE428574
EST:     AGGGGAAGCTGGCAGTCACTCGAGCGTTTGGCGCTGGGTATCTCAAACAG                         CCAAAGTGGAACGATACATTGCTGGAGGTGTTTCGCGTCCAATTTGTGGGG
genomic: AGGGGAAGCTGGCAGTCACTCGAGCGTTTGGCGCTGGGTATCTCAAACAGgttagtatct ... tttgatgcagCCAAAGTGGAACGATACATTGCTGGAGGTGTTTCGCGTCCAATTTGTGGGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACGATCCGCGCATCCGGATGATACGTCGTCGATTGTGAACGACCGTGTCAAGGGGAAGCTGGCAGTCACTCGAGCGTTTGGCGCTGGGTATCTCAAACAGgttagtatcttttctctctttttcttttcttctttttccaacagggtattcatactttctgttttgtttgatgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG