1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgaggacaggcgattatattccctgccgctctggctgacggtttggttgctcctttctttgcttccagGAAGCAGGGAAGATACGATCCGCGCATCCGGATGATACGTCGTCGATTGTGAACGACCGTGTCAAGGGGAAGCTGGCAGTCACTCGAGCGTTTGGCGCTG
species | Selaginella moellendorffii |
transcript | EFJ13137 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CGCTGGGCGCGTTGCAGCTTTCTCTCGACCACAGCACACGCGTTCCAGAG GAAGCAGGGAAGATACGATCTGCGCATCCGGATGATACGTCGTCGATTGTGEST: gi|169021499|gb|FE428573.1|FE428573
genomic: CGCTGGGCGCGTTGCAGCTTTCTCTCGACCACAGCACACGCGTTCCAGAGgtgaggacag ... ttgcttccagGAAGCAGGGAAGATACGATCCGCGCATCCGGATGATACGTCGTCGATTGTG
EST: CGCTGGGCGCATTGCAGCTTTCTCTCGACCACAGCACACGCGTTCCAGAG GAAGCAGGGAAGATACGATCCGCGCATCCGGATGATACGTCGTCGATTGTGEST: gi|169051534|gb|FE459769.1|FE459769
genomic: CGCTGGGCGCGTTGCAGCTTTCTCTCGACCACAGCACACGCGTTCCAGAGgtgaggacag ... ttgcttccagGAAGCAGGGAAGATACGATCCGCGCATCCGGATGATACGTCGTCGATTGTG
EST: CGCTGGGCGCATTGCAGCTTTCTCTCGACCACAGCACACGCGTTCCAGAG GAAGCAGGGAAGATACGATCCGCGCATCCGGATGATACGTCGTCGATTGTGEST: gi|169025176|gb|FE434113.1|FE434113
genomic: CGCTGGGCGCGTTGCAGCTTTCTCTCGACCACAGCACACGCGTTCCAGAGgtgaggacag ... ttgcttccagGAAGCAGGGAAGATACGATCCGCGCATCCGGATGATACGTCGTCGATTGTG
EST: ACCACAGCACACGCGTTCCAGAG GAAGCAGGGAAGATACGATCTGCGCATCCGGATGATACGTCGTCGATTGTGEST: gi|169057607|gb|FE463658.1|FE463658
genomic: ACCACAGCACACGCGTTCCAGAGgtgaggacag ... ttgcttccagGAAGCAGGGAAGATACGATCCGCGCATCCGGATGATACGTCGTCGATTGTG
EST: CGCTGGGCGCATTGCAGCTTTCTCTCGACCACAGCACACGCGTTCCAGAG GAAGCAGGGAAGATACGATCCGCGCATCCGGATGATACGTCGTCGATTGTGEST: gi|169059192|gb|FE467194.1|FE467194
genomic: CGCTGGGCGCGTTGCAGCTTTCTCTCGACCACAGCACACGCGTTCCAGAGgtgaggacag ... ttgcttccagGAAGCAGGGAAGATACGATCCGCGCATCCGGATGATACGTCGTCGATTGTG
EST: ACCACAGCACACGCGTTCCAGAG GAAGCAGGGAAGATACGATCTGCGCATCCGGATGATACGTCGTCGATTGTGEST: gi|169021500|gb|FE428574.1|FE428574
genomic: ACCACAGCACACGCGTTCCAGAGgtgaggacag ... ttgcttccagGAAGCAGGGAAGATACGATCCGCGCATCCGGATGATACGTCGTCGATTGTG
EST: CGCTGGGCGCATTGCAGCTTTCTCTCGACCACAGCACACGCGTTCCAGAG GAAGCAGGGAAGATACGATCCGCGCATCCGGATGATACGTCGTCGATTGTG
genomic: CGCTGGGCGCGTTGCAGCTTTCTCTCGACCACAGCACACGCGTTCCAGAGgtgaggacag ... ttgcttccagGAAGCAGGGAAGATACGATCCGCGCATCCGGATGATACGTCGTCGATTGTG
ttatattccctgccgctctggctgacggtttggttgctcctttctttgcttccagGAAGCAGGGAAGATACGATCCGCGCATCCGGATGATACGTCGTCGATTGTGAACGACCGTGTCAAGGGGAAGCTGGCAGTCACTCGAGCGTTTGGCGCTG
ggctgac putative branch site (score: 3)
ttgctcctttctttgc putative PPT
tttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaggacaggcgattatattccctgccgctctggctgacggtttggttgctcctttctttgcttccagGAAGCAGGGAAGATACGATCCGCGCATCCGGATGATACGTCGTCGATTGTGAACGACCGTGTCAAGGGGAAGCTGGCAGTCACTCGAGCGTTTGGCGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG