1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaattgtttctcatattgtgtaatttcttcgtctcaattttgttttagTTTCTGGATTACATGCCCGGCTTGAGAAGAGAGATTCGATGCTTATGGTAACTGATTTAGACAGTACCAACGGGACCTTCGTTAATAACAGGAGAGTGAG
species | Selaginella moellendorffii |
transcript | EFJ13131 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GGGACGTGTGGCTGACAAGGCAGACATTGTAATTCCAGTTGGAACAG TTTCTGGATTACATGCCCGGCTTGAGAAGAGAGATTCGATGCTTATGGTAAEST: gi|169059706|gb|FE467783.1|FE467783
genomic: GGGACGTGTGGCTGACAAGGCAGACATTGTAATTCCAGTTGGAACAGgtaattgttt ... tttgttttagTTTCTGGATTACATGCCCGGCTTGAGAAGAGAGATTCGATGCTTATGGTAA
EST: GGGACGTGTGGCTGACAAGGCAGACATTGTAATTCCAGTTGGAACAG TTTCTGGATTACATGCCCGGCTTGAGAAGAGAGATTCGATGCTTATGGTAAEST: gi|169103220|gb|FE505624.1|FE505624
genomic: GGGACGTGTGGCTGACAAGGCAGACATTGTAATTCCAGTTGGAACAGgtaattgttt ... tttgttttagTTTCTGGATTACATGCCCGGCTTGAGAAGAGAGATTCGATGCTTATGGTAA
EST: GGTGGGACGTGTGGCTGACAAGGCAGACATTGTAATTCCAGTTGGAACAG TTTCTGGATTACATGCCCGGCTTGAGAAGAGAGATTCGATGCTTATGGTAA
genomic: GGTGGGACGTGTGGCTGACAAGGCAGACATTGTAATTCCAGTTGGAACAGgtaattgttt ... tttgttttagTTTCTGGATTACATGCCCGGCTTGAGAAGAGAGATTCGATGCTTATGGTAA
gtaattgtttctcatattgtgtaatttcttcgtctcaattttgttttagTTTCTGGATTACATGCCCGGCTTGAGAAGAGAGATTCGATGCTTATGGTAACTGATTTAGACAGTACCAACGGGACCTTCGTTAATAACAGGAGAGTGAG
ttttgtttt CT-rich tract
atattgtgtaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattgtttctcatattgtgtaatttcttcgtctcaattttgttttagTTTCTGGATTACATGCCCGGCTTGAGAAGAGAGATTCGATGCTTATGGTAACTGATTTAGACAGTACCAACGGGACCTTCGTTAATAACAGGAGAGTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA