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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttaaaaaccatgacctctctactttttttatttgatgaggtctactttagattgataatctagagtttgatcttgctaatagGATGCTGCCACGGTGGGACGTGTGGCTGACAAGGCAGACATTGTAATTCCAGTTGGAACAG

Basic information

species Selaginella moellendorffii
transcript EFJ13131
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169103220|gb|FE505624.1|FE505624
EST:     GCCACATAGGCGAAGAAGTTCCTTTGCCAAGTGCATTTGAGCTCTCTACT                         GATGCGGCCACGGTGGGACGTGTGGCTGACAAGGCAGACATTGTAATTCCA
genomic: GCCACATAGGCGAAGAAGTTCCTCTGCCAAGTGCATTTGAGCTCTCTACTgtaagttaaa ... ttgctaatagGATGCTGCCACGGTGGGACGTGTGGCTGACAAGGCAGACATTGTAATTCCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatttgatgaggtctactttagattgataatctagagtttgatcttgctaatagGATGCTGCCACGGTGGGACGTGTGGCTGACAAGGCAGACATTGTAATTCCAGTTGGAACAG
                                           tcttgct  CT-rich tract
                  tttagattgataat  TA-rich tract