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gtattgcgtgtaataaatctttgttgacaattgatatatgtgtgtgtatgacagCACGTAACGGAGGAGGGAACTACACTAGTCAAGCAAGCTGAAGATGCGGCCAGCAGCAAAAAGGCTGATAAGAAGGATACTGTTGGTGTCCAGGAGCAG
species | Selaginella moellendorffii |
transcript | EFJ12300 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TCTGTCGCATCCCGAAAGGGTTGGAGCCCGTTGCTGCAATCTTTCGAATG CACGTAACGGAEST: gi|70669089|gb|DN837666.1|DN837666
genomic: TCTGTCGCATCCCGAAAGGGTTGGAGCCCGTTGCTGCAATCTTTCGAATGgtattgcgtg ... tgtatgacagCACGTAACGGA
EST: TCTGTCGCATCCCGAAAGGGTTGGAGCCCGTTGCTGCAATCTTTCGAATG CACGTAACGGAGGAGGGAACTACACTAGTCAAGCAAGCTGAAGATGCCGCCEST: gi|169111912|gb|FE510642.1|FE510642
genomic: TCTGTCGCATCCCGAAAGGGTTGGAGCCCGTTGCTGCAATCTTTCGAATGgtattgcgtg ... tgtatgacagCACGTAACGGAGGAGGGAACTACACTAGTCAAGCAAGCTGAAGATGCGGCC
EST: TCTGTCGCATCCCGAAAGGGTTGGAGCCCGTTGCTGCAATCTTTCGAATG CACGTAACGGAGGAGGGAACTACACTAGTCAAGCAAGCTGAAGATGCGGCCEST: gi|169026189|gb|FE435347.1|FE435347
genomic: TCTGTCGCATCCCGAAAGGGTTGGAGCCCGTTGCTGCAATCTTTCGAATGgtattgcgtg ... tgtatgacagCACGTAACGGAGGAGGGAACTACACTAGTCAAGCAAGCTGAAGATGCGGCC
EST: TCTGTCGCATCCCGAAAGGGTTGGAGCCCGTTGCTGCAATCTTTCGAATG CACGTAACGGAGGAGGGAACTACACTAGTCAAGCAAGCTGAAGATGCGGCCEST: gi|169079161|gb|FE490908.1|FE490908
genomic: TCTGTCGCATCCCGAAAGGGTTGGAGCCCGTTGCTGCAATCTTTCGAATGgtattgcgtg ... tgtatgacagCACGTAACGGAGGAGGGAACTACACTAGTCAAGCAAGCTGAAGATGCGGCC
EST: TCTGTCGCATCCCGAAAGGGTTGGAGCCCGTTGCTGCAATCTTTCGAATG CACGTAACGGAGGAGGGAACTACACTAGTCAAGCAAGCTGAAGATGCCGCCEST: gi|169027130|gb|FE435040.1|FE435040
genomic: TCTGTCGCATCCCGAAAGGGTTGGAGCCCGTTGCTGCAATCTTTCGAATGgtattgcgtg ... tgtatgacagCACGTAACGGAGGAGGGAACTACACTAGTCAAGCAAGCTGAAGATGCGGCC
EST: TCTGTCGCATCCCGAAAGGGTTGGAGCCCGTTGCTGCAATCTTTCGAATG CACGTAACGGAGGAGGGAACTACACTAGTCAAGCAAGCTGAAGATGCGGCC
genomic: TCTGTCGCATCCCGAAAGGGTTGGAGCCCGTTGCTGCAATCTTTCGAATGgtattgcgtg ... tgtatgacagCACGTAACGGAGGAGGGAACTACACTAGTCAAGCAAGCTGAAGATGCGGCC
gtattgcgtgtaataaatctttgttgacaattgatatatgtgtgtgtatgacagCACGTAACGGAGGAGGGAACTACACTAGTCAAGCAAGCTGAAGATGCGGCCAGCAGCAAAAAGGCTGATAAGAAGGATACTGTTGGTGTCCAGGAGCAG
taataaatctttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattgcgtgtaataaatctttgttgacaattgatatatgtgtgtgtatgacagCACGTAACGGAGGAGGGAACTACACTAGTCAAGCAAGCTGAAGATGCGGCCAGCAGCAAAAAGGCTGATAAGAAGGATACTGTTGGTGTCCAGGAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG