1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
gtaaatgatttttgtggttcgaaaactgatttcacaaggaccgtttgtgtggtgagcagAAAGTACAACAAGAGTTGCTTTCACAGTACGAGCAACAGCTCCTTGAGAAGGAACATTCTGGCTGCCATGCTTTGTTAAGGGACGACAAA
species | Selaginella moellendorffii |
transcript | EFJ12300 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AAAGAGTTGGACACTACTTGCACTCAAGCAGTGAATCGAAGCTACTCGAG AAAGTACAACAAGAGTTGCTTTCACAGTACGAGCAACAGCTCCTTGAGAAGEST: gi|169030508|gb|FE439518.1|FE439518
genomic: AAAGAGTTGGACACTACTTGCACTCAAGCAGTGAATCGAAGCTACTCGAGgtaaatgatt ... tggtgagcagAAAGTACAACAAGAGTTGCTTTCACAGTACGAGCAACAGCTCCTTGAGAAG
EST: AAAGAGTTGGACACTACTTGCACTCAAGCAGTGAATCGAAGCTACTCGAG AAAGTACAACAAGAGTTACTTTCACAGTACGAGCAACAGCTCCTTGAGAAGEST: gi|70669089|gb|DN837666.1|DN837666
genomic: AAAGAGTTGGACACTACTTGCACTCAAGCAGTGAATCGAAGCTACTCGAGgtaaatgatt ... tggtgagcagAAAGTACAACAAGAGTTGCTTTCACAGTACGAGCAACAGCTCCTTGAGAAG
EST: AAAGAGTTGGACACTACTTGCACTCAAGCAGTGAATCGAAGCTACTCGAG AAAGTACAACAAGAGTTACTTTCACAGTACGAGCAACAGCTCCTTGAGAAGEST: gi|169111912|gb|FE510642.1|FE510642
genomic: AAAGAGTTGGACACTACTTGCACTCAAGCAGTGAATCGAAGCTACTCGAGgtaaatgatt ... tggtgagcagAAAGTACAACAAGAGTTGCTTTCACAGTACGAGCAACAGCTCCTTGAGAAG
EST: AAAGAGTTGGACACTACTTGCACTCAAGCAGTGAATCGAAGCTACTCGAG AAAGTACAACAAGAGTTGCTTTCACAGTACGAGCAACAGCTCCTTGAGAAGEST: gi|169026189|gb|FE435347.1|FE435347
genomic: AAAGAGTTGGACACTACTTGCACTCAAGCAGTGAATCGAAGCTACTCGAGgtaaatgatt ... tggtgagcagAAAGTACAACAAGAGTTGCTTTCACAGTACGAGCAACAGCTCCTTGAGAAG
EST: AAAGAGTTGGACACTACTTGCACTCAAGCAGTGAATCGAAGCTACTCGAG AAAGTACAACAAGAGTTGCTTTCACAGTACGAGCAACAGCTCCTTGAGAAGEST: gi|169096071|gb|FE500036.1|FE500036
genomic: AAAGAGTTGGACACTACTTGCACTCAAGCAGTGAATCGAAGCTACTCGAGgtaaatgatt ... tggtgagcagAAAGTACAACAAGAGTTGCTTTCACAGTACGAGCAACAGCTCCTTGAGAAG
EST: AAAGAGTTGGACACTACTTGCACTCAAGCAGTGAATCGAAGCTACTCGAG AAAGTACAACAAGAGTTACTTTCACAGTACGAGCAACAGCTCCTTGAGAAGEST: gi|169027130|gb|FE435040.1|FE435040
genomic: AAAGAGTTGGACACTACTTGCACTCAAGCAGTGAATCGAAGCTACTCGAGgtaaatgatt ... tggtgagcagAAAGTACAACAAGAGTTGCTTTCACAGTACGAGCAACAGCTCCTTGAGAAG
EST: AAAGAGTTGGACACTACTTGCACTCAAGCAGTGAATCGAAGCTACTCGAG AAAGTACAACAAGAGTTGCTTTCACAGTACGAGCAACAGCTCCTTGAGAAG
genomic: AAAGAGTTGGACACTACTTGCACTCAAGCAGTGAATCGAAGCTACTCGAGgtaaatgatt ... tggtgagcagAAAGTACAACAAGAGTTGCTTTCACAGTACGAGCAACAGCTCCTTGAGAAG
atgatttttgtggttcgaaaactgatttcacaaggaccgtttgtgtggtgagcagAAAGTACAACAAGAGTTGCTTTCACAGTACGAGCAACAGCTCCTTGAGAAGGAACATTCTGGCTGCCATGCTTTGTTAAGGGACGACAAA
aactgat putative branch site (score: 11)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatgatttttgtggttcgaaaactgatttcacaaggaccgtttgtgtggtgagcagAAAGTACAACAAGAGTTGCTTTCACAGTACGAGCAACAGCTCCTTGAGAAGGAACATTCTGGCTGCCATGCTTTGTTAAGGGACGACAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA