1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GTTGTGCGCCAGAGCTGCGGCGAAAGAAGCGAAGATTGTCCACTACGACGCCAAAGCTCTGGGAATCGATGCTAAGAAGGCATTTCCTTTCCGAAACATGgtatgcccaacctttgattattttggttttcatattttcctttcgttgtttccgctgctgtatag
species | Selaginella moellendorffii |
transcript | EFJ07654 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CCAAAGCTCTGGGAATCGATGCGAGGAAGGCATTTCCTTTCCGAAACATG CATTTCTACGCGGAACCAAGAGCAGCAAAGGAGAAGCTCGGGTGGACGAGCEST: gi|169028845|gb|FE438570.1|FE438570
genomic: CCAAAGCTCTGGGAATCGATGCTAAGAAGGCATTTCCTTTCCGAAACATGgtatgcccaa ... tgctgtatagCATTTCTACGCGGAACCAAGAGCAGCAAAGGAGAAGCTCGGGTGGACGAGC
EST: CCAAAGCTCTGGGAATCGATGCGAGGAAGGCATTTCCTTTCCGAAACATG CATTTCTACGCGGAACCAAGAGCAGCAAAGGAGAAGCTCGGGTGGACGAGCEST: gi|169095695|gb|FE497021.1|FE497021
genomic: CCAAAGCTCTGGGAATCGATGCTAAGAAGGCATTTCCTTTCCGAAACATGgtatgcccaa ... tgctgtatagCATTTCTACGCGGAACCAAGAGCAGCAAAGGAGAAGCTCGGGTGGACGAGC
EST: CCAAAGCTCTGGGAATCGATGCGAGGAAGGCATTTCCTTTCCGAAACATG CATTTCTACGCGGAACCAAGAGCAGCAAAGGAGAAGCTCGGGTGGACGAGCEST: gi|169109762|gb|FE511833.1|FE511833
genomic: CCAAAGCTCTGGGAATCGATGCTAAGAAGGCATTTCCTTTCCGAAACATGgtatgcccaa ... tgctgtatagCATTTCTACGCGGAACCAAGAGCAGCAAAGGAGAAGCTCGGGTGGACGAGC
EST: CCAAAGCTCTGGGAATCGATGCGAGGAAGGCATTTCCTTTCCGAAACATG CATTTCTACGCGGAACCAAGAGCAGCAAAGGAGAAGCTCGGGTGGACGAGCEST: gi|169083944|gb|FE493584.1|FE493584
genomic: CCAAAGCTCTGGGAATCGATGCTAAGAAGGCATTTCCTTTCCGAAACATGgtatgcccaa ... tgctgtatagCATTTCTACGCGGAACCAAGAGCAGCAAAGGAGAAGCTCGGGTGGACGAGC
EST: CCAAAGCTCTGGGAATCGATGCGAGGAAGGCATTTCCTTTCCGAAACATG CATTTCTACGCGGAACCAAGAGCAGCAAAGGAGAAGCTCGGGTGGACGAGCEST: gi|169034178|gb|FE444290.1|FE444290
genomic: CCAAAGCTCTGGGAATCGATGCTAAGAAGGCATTTCCTTTCCGAAACATGgtatgcccaa ... tgctgtatagCATTTCTACGCGGAACCAAGAGCAGCAAAGGAGAAGCTCGGGTGGACGAGC
EST: CCAAAGCTCTGGGAATCGATGCGAGGAAGGCATTTCCTTTCCGAAACATG CATTTCTACGCGGAACCAAGAGCAGCAAAGGAGAAGCTCGGGTGGACGAGCEST: gi|169082567|gb|FE489064.1|FE489064
genomic: CCAAAGCTCTGGGAATCGATGCTAAGAAGGCATTTCCTTTCCGAAACATGgtatgcccaa ... tgctgtatagCATTTCTACGCGGAACCAAGAGCAGCAAAGGAGAAGCTCGGGTGGACGAGC
EST: CCAAAGCTCTGGGAATCGATGCGAGGAAGGCATTTCCTTTCCGAAACATG CATTTCTACGCGGAACCAAGAGCAGCAAAGGAGAAGCTCGGGTGGACGAGCEST: gi|169050319|gb|FE458373.1|FE458373
genomic: CCAAAGCTCTGGGAATCGATGCTAAGAAGGCATTTCCTTTCCGAAACATGgtatgcccaa ... tgctgtatagCATTTCTACGCGGAACCAAGAGCAGCAAAGGAGAAGCTCGGGTGGACGAGC
EST: CCAAAGCTCTGGGAATCGATGCGAGGAAGGCATTTCCTTTCCGAAACATG CATTTCTACGCGGAACCAAGAGCAGCAAAGGAGAAGCTCGGGTGGACGAGCEST: gi|169103551|gb|FE507398.1|FE507398
genomic: CCAAAGCTCTGGGAATCGATGCTAAGAAGGCATTTCCTTTCCGAAACATGgtatgcccaa ... tgctgtatagCATTTCTACGCGGAACCAAGAGCAGCAAAGGAGAAGCTCGGGTGGACGAGC
EST: CCAAAGCTCTGGGAATCGATGCGAGGAAGGCATTTCCTTTCCGAAACATG CATTTCTACGCGGAACCAAGAGCAGCAAAGGAGAAGCTCGGGTGGACGAGCEST: gi|169049506|gb|FE457702.1|FE457702
genomic: CCAAAGCTCTGGGAATCGATGCTAAGAAGGCATTTCCTTTCCGAAACATGgtatgcccaa ... tgctgtatagCATTTCTACGCGGAACCAAGAGCAGCAAAGGAGAAGCTCGGGTGGACGAGC
EST: CCAAAGCTCTGGGAATCGATGCGAGGAAGGCATTTCCTTTCCGAAACATG CATTTCTACGCGGAACCAAGAGCAGCAAAGGAGAAGCTCGGGTGGACGAGCEST: gi|169020221|gb|FE428257.1|FE428257
genomic: CCAAAGCTCTGGGAATCGATGCTAAGAAGGCATTTCCTTTCCGAAACATGgtatgcccaa ... tgctgtatagCATTTCTACGCGGAACCAAGAGCAGCAAAGGAGAAGCTCGGGTGGACGAGC
EST: CCAAAGCTCTGGGAATCGATGCGAGGAAGGCATTTCCTTTCCGAAACATG CATTTCTACGCGGAACCAAGAGCAGCAAAGGAGAAGCTCGGGTGGACGAGCEST: gi|169053974|gb|FE461273.1|FE461273
genomic: CCAAAGCTCTGGGAATCGATGCTAAGAAGGCATTTCCTTTCCGAAACATGgtatgcccaa ... tgctgtatagCATTTCTACGCGGAACCAAGAGCAGCAAAGGAGAAGCTCGGGTGGACGAGC
EST: CCAAAGCTCTGGGAATCGATGCTAAGAAGGCATTTCCTTTCCGAAACATG CATTTCTACGCGGAACCAAGAGCAGCAAAGGAGAAGCTCGGGTGGACGAGCEST: gi|169069903|gb|FE477555.1|FE477555
genomic: CCAAAGCTCTGGGAATCGATGCTAAGAAGGCATTTCCTTTCCGAAACATGgtatgcccaa ... tgctgtatagCATTTCTACGCGGAACCAAGAGCAGCAAAGGAGAAGCTCGGGTGGACGAGC
EST: CCAAAGCTCTGGGAATCGATGCGAGGAAGGCATTTCCTTTCCGAAACATG CATTTCTACGCGGAACCAAGAGCAGCAAAGGAGAAGCTCGGGTGGACGAGCEST: gi|169039099|gb|FE448280.1|FE448280
genomic: CCAAAGCTCTGGGAATCGATGCTAAGAAGGCATTTCCTTTCCGAAACATGgtatgcccaa ... tgctgtatagCATTTCTACGCGGAACCAAGAGCAGCAAAGGAGAAGCTCGGGTGGACGAGC
EST: CCAAAGCTCTGGGAATCGATGCGAGGAAGGCATTTCCTTTCCGAAACATG CATTTCTACGCGGAACCAAGAGCAGCAAAGGAGAAGCTCGGGTGGACGAGCEST: gi|169064479|gb|FE472562.1|FE472562
genomic: CCAAAGCTCTGGGAATCGATGCTAAGAAGGCATTTCCTTTCCGAAACATGgtatgcccaa ... tgctgtatagCATTTCTACGCGGAACCAAGAGCAGCAAAGGAGAAGCTCGGGTGGACGAGC
EST: CCAAAGCTCTGGGAATCGATGCTAAGAAGGCATTTCCTTTCCGAAACATG CATTTCTACGCGGAACCAAGAGCAGCAAAGGAGAAGCTCGGGTGGACGAGC
genomic: CCAAAGCTCTGGGAATCGATGCTAAGAAGGCATTTCCTTTCCGAAACATGgtatgcccaa ... tgctgtatagCATTTCTACGCGGAACCAAGAGCAGCAAAGGAGAAGCTCGGGTGGACGAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGTGCGCCAGAGCTGCGGCGAAAGAAGCGAAGATTGTCCACTACGACGCCAAAGCTCTGGGAATCGATGCTAAGAAGGCATTTCCTTTCCGAAACATGgtatgcccaacctttgattattttggttttcatattttcctttcgttgtttccgctgctgtatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG