1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtatgttcttgactatctctcttttatattcgttcttcctctttcttttcttctttgcagGAACTGCGAGATCTTGGAGTATCAACAGTGTGGGGCGATCCGAAAGACGTTGGAGCAGCCGTGGGTGGCAAATCGTTCCATGCCGTTCTAGACAACAATG
species | Selaginella moellendorffii |
transcript | EFJ07654 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GTGAGGAGAGCTCGGATAAGATGAAGAAGCCACCATTCTCGCGGTTCTCG GAACTGCGAGATCTTGGAGTATCAACCGTGTGGGGCGATCCGAAAGACGTTEST: gi|169034179|gb|FE444291.1|FE444291
genomic: GTGAGGAGAGCTCGGATAAGATGAAGAAGCCACCATTCTCGCGGTTCTCGgtatgttctt ... ttctttgcagGAACTGCGAGATCTTGGAGTATCAACAGTGTGGGGCGATCCGAAAGACGTT
EST: GTGAGGAGAGCTCGGATAAGATGAAGAAGCCACCATTCTCGCGGTTCTCG GAACTGCGAGATCTTGGAGTATCAACCGTGTGGGGCGATCCGAAAGACGTTEST: gi|169064480|gb|FE472563.1|FE472563
genomic: GTGAGGAGAGCTCGGATAAGATGAAGAAGCCACCATTCTCGCGGTTCTCGgtatgttctt ... ttctttgcagGAACTGCGAGATCTTGGAGTATCAACAGTGTGGGGCGATCCGAAAGACGTT
EST: GTGAGGAGAGCTCGGATAAGATGAAGAAGCCACCATTCTCGCGGTTCTCG GAACTGCGAGATCTTGGAGTATCAACAGTGTGGGGCGATCCGAAAGACGTTEST: gi|169053973|gb|FE461272.1|FE461272
genomic: GTGAGGAGAGCTCGGATAAGATGAAGAAGCCACCATTCTCGCGGTTCTCGgtatgttctt ... ttctttgcagGAACTGCGAGATCTTGGAGTATCAACAGTGTGGGGCGATCCGAAAGACGTT
EST: GTGAGGAGAGCTCGGATAAGATGAAGAAGCCACCATTCTCGCGGTTCTCG GAACTGCGAGATCTTGGAGTATCAACAGTGTGGGGCGATCCGAAAGACGTTEST: gi|169049507|gb|FE457703.1|FE457703
genomic: GTGAGGAGAGCTCGGATAAGATGAAGAAGCCACCATTCTCGCGGTTCTCGgtatgttctt ... ttctttgcagGAACTGCGAGATCTTGGAGTATCAACAGTGTGGGGCGATCCGAAAGACGTT
EST: GTGAGGAGAGCTCGGATAAGATGAAGAAGCCACCATTCTCGCGGTTCTCG GAACTGCGAGATCTTGGAGTATCAACCGTGTGGGGCGATCCGAAAGACGTT
genomic: GTGAGGAGAGCTCGGATAAGATGAAGAAGCCACCATTCTCGCGGTTCTCGgtatgttctt ... ttctttgcagGAACTGCGAGATCTTGGAGTATCAACAGTGTGGGGCGATCCGAAAGACGTT
ttcttgactatctctcttttatattcgttcttcctctttcttttcttctttgcagGAACTGCGAGATCTTGGAGTATCAACAGTGTGGGGCGATCCGAAAGACGTTGGAGCAGCCGTGGGTGGCAAATCGTTCCATGCCGTTCTAGACAACAATG
tcttgac putative branch site (score: 36)
tctctcttttatattc putative PPT
tcttttatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgttcttgactatctctcttttatattcgttcttcctctttcttttcttctttgcagGAACTGCGAGATCTTGGAGTATCAACAGTGTGGGGCGATCCGAAAGACGTTGGAGCAGCCGTGGGTGGCAAATCGTTCCATGCCGTTCTAGACAACAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG