1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GCCAGAGATCAATTCTCTAAGAAAGCATCCAATTCGTCATACAGATTTGCTCTTGAAGCAGGGAGAAGTTTTCAAAGTAAATGGCTCTCAAGGATCGCAGgtaccacacacttgttctctctttctgtttccaagctgaatggctttcttttgtccttgcag
species | Selaginella moellendorffii |
transcript | EFJ07565 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TCTTGAAGCANGGAGAAGTTTTCANAGTAAATGGCTCTCAAGGATCGCAG CTCGATATCGAGGTGACTTTTTCAA-TCCCAAAGGCTEST: gi|169114759|gb|FE516020.1|FE516020
genomic: TCTTGAAGCAGGGAGAAGTTTTCAAAGTAAATGGCTCTCAAGGATCGCAGgtaccacaca ... gtccttgcagCTCGATATCGAGGTGACTTTC-CAAATCCCAAAGGCT
EST: TCTTGAAGCAGGGAGAAGTTTTCAAAGTAAATGGCTCTCAAGGATCGCAG CTCGATATCGAGGTGACTTTCCAAATCCCAAAGGCTCACGCCAACGATGAGEST: gi|169028108|gb|FE435960.1|FE435960
genomic: TCTTGAAGCAGGGAGAAGTTTTCAAAGTAAATGGCTCTCAAGGATCGCAGgtaccacaca ... gtccttgcagCTCGATATCGAGGTGACTTTCCAAATCCCAAAGGCTCACGCCAACGATGAG
EST: TCTTGAAGCAGGGAGAAGTTTTCAAAGTAAATGGCTCTCAAGGATCGCAG CTCGATATCGAGGTGACTTTCCAAATCCCAAAGGCTCACGCCAACGATGAGEST: gi|169067554|gb|FE475790.1|FE475790
genomic: TCTTGAAGCAGGGAGAAGTTTTCAAAGTAAATGGCTCTCAAGGATCGCAGgtaccacaca ... gtccttgcagCTCGATATCGAGGTGACTTTCCAAATCCCAAAGGCTCACGCCAACGATGAG
EST: TCTTGAAGCAGGGAGAAGTTTTCAAAGTAAATGGCTCTCAAGGATCGCAG CTCGATATCGAGGTGACTTTCCAAATCCCAAAGGCTCACGCCAACGATGAGEST: gi|169114760|gb|FE516021.1|FE516021
genomic: TCTTGAAGCAGGGAGAAGTTTTCAAAGTAAATGGCTCTCAAGGATCGCAGgtaccacaca ... gtccttgcagCTCGATATCGAGGTGACTTTCCAAATCCCAAAGGCTCACGCCAACGATGAG
EST: TCTTGAAGCAGGGAGAAGTTTTCAAAGTAAATGGCTCTCAAGGATCGCAG CTCGATATCGAGGTGACTTTCCAAATCCCAAAGGCTCACGCCAACGATGAGEST: gi|169037851|gb|FE445760.1|FE445760
genomic: TCTTGAAGCAGGGAGAAGTTTTCAAAGTAAATGGCTCTCAAGGATCGCAGgtaccacaca ... gtccttgcagCTCGATATCGAGGTGACTTTCCAAATCCCAAAGGCTCACGCCAACGATGAG
EST: TCTTGAAGCAGGGAGAAGTTTTCAAAGTAAATGGCTCTCAAGGATCGCAG CTCGATATCGAGGTGACTTTTCAAATCCCAAAGGCTCACGCCAACGATGAGEST: gi|169026531|gb|FE434792.1|FE434792
genomic: TCTTGAAGCAGGGAGAAGTTTTCAAAGTAAATGGCTCTCAAGGATCGCAGgtaccacaca ... gtccttgcagCTCGATATCGAGGTGACTTTCCAAATCCCAAAGGCTCACGCCAACGATGAG
EST: TCTTGAAGCAGGGAGAAGTTTTCAAAGTAAATGGCTCTCAAGGATCGCAG CTCGATATCGAGGTGACTTTCCAAATCCCAAAGGCTCACGCCAACGATGAG
genomic: TCTTGAAGCAGGGAGAAGTTTTCAAAGTAAATGGCTCTCAAGGATCGCAGgtaccacaca ... gtccttgcagCTCGATATCGAGGTGACTTTCCAAATCCCAAAGGCTCACGCCAACGATGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCAGAGATCAATTCTCTAAGAAAGCATCCAATTCGTCATACAGATTTGCTCTTGAAGCAGGGAGAAGTTTTCAAAGTAAATGGCTCTCAAGGATCGCAGgtaccacacacttgttctctctttctgtttccaagctgaatggctttcttttgtccttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT