1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtacgcatgcgttacttgaggttacttaagattttggtcttcatttgtttcgatcgtttccttggcttcactgcatacttagtgtttttcattcacgcatttgttgttctcgttgcgttctcctttgtgcttgtgtgctagcttcgtttcaaagctttagctgaaaattcgtcgtccttgtgaacagGCAATTCCCAGAGTTGTATGGCTCGACGAAAACCAGCATTCCCTTCGGCAGTGGCCCGTGCCAGAGATCAATTCTCTAAGAAAGCATCCAATTCGTCATA
species | Selaginella moellendorffii |
transcript | EFJ07565 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGGCCGACAAGCCCACGTCGGACATTCGCAAGGGATGGGCTTCTGTCCAG GCAATTCCCAGAGTTGTATGGCTCGACGAANACCAGCATTCCCTTCGGCAGEST: gi|169114760|gb|FE516021.1|FE516021
genomic: AGGCCGACAAGCCCACGTCGGACATTCGCAAGGGATGGGCTTCTGTCCAGgtacgcatgc ... ttgtgaacagGCAATTCCCAGAGTTGTATGGCTCGACGAAAACCAGCATTCCCTTCGGCAG
EST: AGGCCGACAAGCCCACGTCGGACATTCGCAAGGGATGGGCTTCTGTCCAG GCAATTCCCAGAGTTGTATGGCTCGACGAAAACCAGCATTCCCTTCGGCAGEST: gi|169037851|gb|FE445760.1|FE445760
genomic: AGGCCGACAAGCCCACGTCGGACATTCGCAAGGGATGGGCTTCTGTCCAGgtacgcatgc ... ttgtgaacagGCAATTCCCAGAGTTGTATGGCTCGACGAAAACCAGCATTCCCTTCGGCAG
EST: AGGCCGACAAGCCCACGTCGGACATTCGCAAGGGATGGGCTTCTGTCCAG GCAATTCCCAGAGTTGTATGGCTCGACGAAAACCAGCATTCCCTTCGGCAGEST: gi|169026531|gb|FE434792.1|FE434792
genomic: AGGCCGACAAGCCCACGTCGGACATTCGCAAGGGATGGGCTTCTGTCCAGgtacgcatgc ... ttgtgaacagGCAATTCCCAGAGTTGTATGGCTCGACGAAAACCAGCATTCCCTTCGGCAG
EST: AGGGATGGGCTTCTGTCCAG GCAATTCCCAGAGTTGTATGGCTCGACGAAAACCAGCATTCCCTTCGGCAG
genomic: AGGGATGGGCTTCTGTCCAGgtacgcatgc ... ttgtgaacagGCAATTCCCAGAGTTGTATGGCTCGACGAAAACCAGCATTCCCTTCGGCAG
gtgtgctagcttcgtttcaaagctttagctgaaaattcgtcgtccttgtgaacagGCAATTCCCAGAGTTGTATGGCTCGACGAAAACCAGCATTCCCTTCGGCAGTGGCCCGTGCCAGAGATCAATTCTCTAAGAAAGCATCCAATTCGTCATA
tcgtcctt CT-rich tract
tgaaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgcatgcgttacttgaggttacttaagattttggtcttcatttgtttcgatcgtttccttggcttcactgcatacttagtgtttttcattcacgcatttgttgttctcgttgcgttctcctttgtgcttgtgtgctagcttcgtttcaaagctttagctgaaaattcgtcgtccttgtgaacagGCAATTCCCAGAGTTGTATGGCTCGACGAAAACCAGCATTCCCTTCGGCAGTGGCCCGTGCCAGAGATCAATTCTCTAAGAAAGCATCCAATTCGTCATA
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