1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CATCAAGGGCGTGTGGTCGGGATCCGCGACGATCGTCAATGGCAAGCCCATTCTTCTCTATACTGGATGGACAAATTCCTCCACGCAAGTCCAAAACAAGgtcttctcctcccatgtcctccgttgttagggttcttgagctcgacatttcttctttgatttcgaccag
species | Selaginella moellendorffii |
transcript | EFJ07565 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TTCTTCTCTATACTGGATGGACAAATTCCTCCACGCAAGTCCAAAACAAG GCTGTGCCCAAGAACTCCTCCGATCCGCTACTGCGCGAATGGATCAAAGTCEST: gi|169053139|gb|FE463038.1|FE463038
genomic: TTCTTCTCTATACTGGATGGACAAATTCCTCCACGCAAGTCCAAAACAAGgtcttctcct ... tttcgaccagGCTGTGCCCAAGAACTCCTCCGATCCGCTACTGCGCGAATGGATCAAAGTC
EST: TTCTTCTCTATACTGGATGGACAAATTCCTCCACGCAAGTCCAAAACAAG GCTGTGCCCAAGAACTCCTCCGATCCGCTACTGCGCGAATGGATCAAAGTCEST: gi|169034346|gb|FE443119.1|FE443119
genomic: TTCTTCTCTATACTGGATGGACAAATTCCTCCACGCAAGTCCAAAACAAGgtcttctcct ... tttcgaccagGCTGTGCCCAAGAACTCCTCCGATCCGCTACTGCGCGAATGGATCAAAGTC
EST: TTCTTCTCTATACTGGATGGACAAATTCCTCCACGCAAGTCCAAAACAAG GCTGTGCCCAAGAACTCCTCCGATCCGCTACTGCGCGAATGGATCAAAGTCEST: gi|169026532|gb|FE434793.1|FE434793
genomic: TTCTTCTCTATACTGGATGGACAAATTCCTCCACGCAAGTCCAAAACAAGgtcttctcct ... tttcgaccagGCTGTGCCCAAGAACTCCTCCGATCCGCTACTGCGCGAATGGATCAAAGTC
EST: TTCTTCTCTATACTGGATGGACAAATTCCTCCACGCAAGTCCAAAACAAG GCTGTGCCCAAGAACTCCTCCGATCCGCTACTGCGCGAATGGATCAAAGTCEST: gi|169081376|gb|FE490822.1|FE490822
genomic: TTCTTCTCTATACTGGATGGACAAATTCCTCCACGCAAGTCCAAAACAAGgtcttctcct ... tttcgaccagGCTGTGCCCAAGAACTCCTCCGATCCGCTACTGCGCGAATGGATCAAAGTC
EST: TTCTTCTCTACACTGGATGGACGAATTCCTCCACGCAAGTCCAAAACAAG GCTGTGCCCAAGAACTCCTCCGATCCGCTACTGCGCGAATGGATCAAAGTC
genomic: TTCTTCTCTATACTGGATGGACAAATTCCTCCACGCAAGTCCAAAACAAGgtcttctcct ... tttcgaccagGCTGTGCCCAAGAACTCCTCCGATCCGCTACTGCGCGAATGGATCAAAGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATCAAGGGCGTGTGGTCGGGATCCGCGACGATCGTCAATGGCAAGCCCATTCTTCTCTATACTGGATGGACAAATTCCTCCACGCAAGTCCAAAACAAGgtcttctcctcccatgtcctccgttgttagggttcttgagctcgacatttcttctttgatttcgaccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA