1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaaaatctttcgaaagtccatttcgaccacttccaagttttgctaagagagcctctattgcagATGCCGAGAAGATTTTCAAGTCCATGCAAAGCGCCGGCTTTTCTCCAAACCTCAAGTCCAACATGCTCCTCCTGAGCGCCTATGCAAGAGCCGGGAGGGT
species | Selaginella moellendorffii |
transcript | EFJ04344 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTCTCACAACATTCTTATCAATGCCTATGGACGAGCTGGGCTATATGAAG ATGCCGAGAAGATTTTCAAGTCCATGCAAAGCGCCGGCTTTTCTCCAAACCEST: gi|169068040|gb|FE476407.1|FE476407
genomic: CTCTCACAACATTCTTATCAATGCCTATGGACGAGCTGGGCTATATGAAGgtaaaatctt ... tctattgcagATGCCGAGAAGATTTTCAAGTCCATGCAAAGCGCCGGCTTTTCTCCAAACC
EST: CTCTCACAACATTCTTATCAATGCCTATGGACGAGCTGGGCTATATGAAG ATGCCGAGAAGATTTTCAAGTCCATGCAAAGCGCCGGCTTTTCTCCAAACCEST: gi|169054655|gb|FE461595.1|FE461595
genomic: CTCTCACAACATTCTTATCAATGCCTATGGACGAGCTGGGCTATATGAAGgtaaaatctt ... tctattgcagATGCCGAGAAGATTTTCAAGTCCATGCAAAGCGCCGGCTTTTCTCCAAACC
EST: CTCTCACAACATTCTTATCAATGCCTATGGACGAGCTGGGCTATATGAAG ATGCCGAGAAGATTTTCAAGTCCATGCAAAGCGCCGGCTTTTCTCCAAACCEST: gi|169034951|gb|FE444825.1|FE444825
genomic: CTCTCACAACATTCTTATCAATGCCTATGGACGAGCTGGGCTATATGAAGgtaaaatctt ... tctattgcagATGCCGAGAAGATTTTCAAGTCCATGCAAAGCGCCGGCTTTTCTCCAAACC
EST: CTCTCACAACATTCTTATCAATGCCTATGGACGAGCTGGGCTATATGAAG ATGCCGAGAAGATTTTCAAGTCCATGCAAAGCGCCGGCTTTTCTCCAAACCEST: gi|169103786|gb|FE506151.1|FE506151
genomic: CTCTCACAACATTCTTATCAATGCCTATGGACGAGCTGGGCTATATGAAGgtaaaatctt ... tctattgcagATGCCGAGAAGATTTTCAAGTCCATGCAAAGCGCCGGCTTTTCTCCAAACC
EST: CTCTCACAACATTCTTATCAATGCCTATGGACGAGCTGGGCTATATGAAG ATGCCGAGAAGATTTTCAAGTCCATGCAAAGCGCCGGCTTTTCTCCAAACC
genomic: CTCTCACAACATTCTTATCAATGCCTATGGACGAGCTGGGCTATATGAAGgtaaaatctt ... tctattgcagATGCCGAGAAGATTTTCAAGTCCATGCAAAGCGCCGGCTTTTCTCCAAACC
ttcgaaagtccatttcgaccacttccaagttttgctaagagagcctctattgcagATGCCGAGAAGATTTTCAAGTCCATGCAAAGCGCCGGCTTTTCTCCAAACCTCAAGTCCAACATGCTCCTCCTGAGCGCCTATGCAAGAGCCGGGAGGGT
cctctatt CT-rich tract
aagtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaatctttcgaaagtccatttcgaccacttccaagttttgctaagagagcctctattgcagATGCCGAGAAGATTTTCAAGTCCATGCAAAGCGCCGGCTTTTCTCCAAACCTCAAGTCCAACATGCTCCTCCTGAGCGCCTATGCAAGAGCCGGGAGGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA