1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaacgcctacaacctttgttctgcgctgttgggggaactaagttttactcaggcttttgtttcagGGCCGCTGGCATGCAACACCTTTCTCCACGTTTTAGAAGACGCGAAAGAATACAGGAGGGCCGAAGCTTTGTTCCGGGACCTGGAGAAGTACGAGTGCGA
species | Selaginella moellendorffii |
transcript | EFJ04344 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AAAGGCCGAGGAACTCTTCGTCCAAATGCAAAAGCGGGGATACAGTCCTG GGCCGCTGGCATGCAACACCTTTCTCCACGTTTTAGAAGACGCGAAAGAATEST: gi|169080120|gb|FE487434.1|FE487434
genomic: AAAGGCCGAGGAACTCTTCGTCCAAATGCAAAAGCGGGGATACAGTCCTGgtaacgccta ... tttgtttcagGGCCGCTGGCATGCAACACCTTTCTCCACGTTTTAGAAGACGCGAAAGAAT
EST: AAAGGCCGAGGAACTCTTCGTCCAAATGCAAAAGCGGGGATACAGTCCTG GGCCGCTGGCATGCAACACCTTTCTCCACGTTTTAGAAGACGCGAAAGAATEST: gi|169068041|gb|FE476408.1|FE476408
genomic: AAAGGCCGAGGAACTCTTCGTCCAAATGCAAAAGCGGGGATACAGTCCTGgtaacgccta ... tttgtttcagGGCCGCTGGCATGCAACACCTTTCTCCACGTTTTAGAAGACGCGAAAGAAT
EST: AAAGGCCGAGGAACTCTTCGTCCAAATGCAAAAGCGGGGATACAGTCCTG GGCCGCTGGCATGCAACACCTTTCTCCACGTTTTAGAAGACGCGAAAGAATEST: gi|169037772|gb|FE442483.1|FE442483
genomic: AAAGGCCGAGGAACTCTTCGTCCAAATGCAAAAGCGGGGATACAGTCCTGgtaacgccta ... tttgtttcagGGCCGCTGGCATGCAACACCTTTCTCCACGTTTTAGAAGACGCGAAAGAAT
EST: AAAGGCCGAGGAACTCTTCGTCCAAATGCAAAAGCGGGGATACAGTCCTG GGCCGCTGGCATGCAACACCTTTCTCCACGTTTTAGAAGACGCGAAAGAATEST: gi|169037699|gb|FE444776.1|FE444776
genomic: AAAGGCCGAGGAACTCTTCGTCCAAATGCAAAAGCGGGGATACAGTCCTGgtaacgccta ... tttgtttcagGGCCGCTGGCATGCAACACCTTTCTCCACGTTTTAGAAGACGCGAAAGAAT
EST: AAAGGCCGAGGAACTCTTCGTCCAAATGCAAAAGCGGGGATACAGTCCTG GGCCGCTGGCATGCAACACCTTTCTCCACGTTTTAGAAGACGCGAAAGAATEST: gi|169056022|gb|FE465171.1|FE465171
genomic: AAAGGCCGAGGAACTCTTCGTCCAAATGCAAAAGCGGGGATACAGTCCTGgtaacgccta ... tttgtttcagGGCCGCTGGCATGCAACACCTTTCTCCACGTTTTAGAAGACGCGAAAGAAT
EST: AAAGGCCGAGGAACTCTTCGTCCAAATGCAAAAGCGGGGATACAGTCCTG GGCCGCTGGCATGCAACACCTTTCTCCACGTTTTAGAAGACGCGAAAGAAT
genomic: AAAGGCCGAGGAACTCTTCGTCCAAATGCAAAAGCGGGGATACAGTCCTGgtaacgccta ... tttgtttcagGGCCGCTGGCATGCAACACCTTTCTCCACGTTTTAGAAGACGCGAAAGAAT
aacctttgttctgcgctgttgggggaactaagttttactcaggcttttgtttcagGGCCGCTGGCATGCAACACCTTTCTCCACGTTTTAGAAGACGCGAAAGAATACAGGAGGGCCGAAGCTTTGTTCCGGGACCTGGAGAAGTACGAGTGCGA
cttttgtttc CT-rich tract
taagtttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacgcctacaacctttgttctgcgctgttgggggaactaagttttactcaggcttttgtttcagGGCCGCTGGCATGCAACACCTTTCTCCACGTTTTAGAAGACGCGAAAGAATACAGGAGGGCCGAAGCTTTGTTCCGGGACCTGGAGAAGTACGAGTGCGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT