1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtatagtagaaaccttccatttttgtttccttgaaaaatgctgttttttaagCCAAGGAGGTTCTCCGGCCGGGGCACTCGAGATTTTCCAGACAATGCAAAGAAATGGCTGCTTCCCGGACACGGTCTCTCACAACATTCTTATCAATGCC
species | Selaginella moellendorffii |
transcript | EFJ04344 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GACTACAAGCCCGACCACTACGCCTACAACGCGTTGATGGAAGCGTACAG CCAAGGAGGTTCTCCGGCCGGGGCACTCGAGATTTTCCAGACAATGCAAAGEST: gi|169080120|gb|FE487434.1|FE487434
genomic: GACTACAAGCCCGACCACTACGCCTACAACGCGTTGATGGAAGCGTACAGgtatagtaga ... gttttttaagCCAAGGAGGTTCTCCGGCCGGGGCACTCGAGATTTTCCAGACAATGCAAAG
EST: GACTACNAGCCCGACCACTACGCCTACAACGCGTTGATGGGAGCGTACAG CCCAAG-AGGTTTCTCCGGCCGGG-CACTCGAGEST: gi|169054655|gb|FE461595.1|FE461595
genomic: GACTACAAGCCCGACCACTACGCCTACAACGCGTTGATGGAAGCGTACAGgtatagtaga ... gttttttaagCC-AAGGAGGTT-CTCCGGCCGGGGCACTCGAG
EST: ACAAGCCCGACCACTACGCCTACAACGCGTTGATGGAAGCGTACAG CCAAGGAGGTTCTCCGGCCGGGGCACTCGAGATTTTCCAGACAATGCAAAGEST: gi|169034951|gb|FE444825.1|FE444825
genomic: ACAAGCCCGACCACTACGCCTACAACGCGTTGATGGAAGCGTACAGgtatagtaga ... gttttttaagCCAAGGAGGTTCTCCGGCCGGGGCACTCGAGATTTTCCAGACAATGCAAAG
EST: GCCTACAACGCGTTGATGGAAGCGTACAG CCAAGGAGGTTCTCCGGCCGGGGCACTCGAGATTTTCCAGACAATGCAAAGEST: gi|169037699|gb|FE444776.1|FE444776
genomic: GCCTACAACGCGTTGATGGAAGCGTACAGgtatagtaga ... gttttttaagCCAAGGAGGTTCTCCGGCCGGGGCACTCGAGATTTTCCAGACAATGCAAAG
EST: GACTACAAGCCCGACCACTACGCCTACAACGCGTTGATGGAAGCGTACAG CCNAGGAGGTTCTCCGGCCGGGGCACTCGAGATTTTCCAGACNATGCANAGEST: gi|169103786|gb|FE506151.1|FE506151
genomic: GACTACAAGCCCGACCACTACGCCTACAACGCGTTGATGGAAGCGTACAGgtatagtaga ... gttttttaagCCAAGGAGGTTCTCCGGCCGGGGCACTCGAGATTTTCCAGACAATGCAAAG
EST: CGCGTTGATGGAAGCGTACAG CCAAGGAGGTTCTCCGGCCGGGGCACTCGAGATTTTCCAGACAATGCAAAG
genomic: CGCGTTGATGGAAGCGTACAGgtatagtaga ... gttttttaagCCAAGGAGGTTCTCCGGCCGGGGCACTCGAGATTTTCCAGACAATGCAAAG
gtatagtagaaaccttccatttttgtttccttgaaaaatgctgttttttaagCCAAGGAGGTTCTCCGGCCGGGGCACTCGAGATTTTCCAGACAATGCAAAGAAATGGCTGCTTCCCGGACACGGTCTCTCACAACATTCTTATCAATGCC
ctgtttttt CT-rich tract
atttttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatagtagaaaccttccatttttgtttccttgaaaaatgctgttttttaagCCAAGGAGGTTCTCCGGCCGGGGCACTCGAGATTTTCCAGACAATGCAAAGAAATGGCTGCTTCCCGGACACGGTCTCTCACAACATTCTTATCAATGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT