1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tgtagcatgaaagtgattaaatgccagtcacattgtgaatctgtaattagtctgatgttgatgagtattaagaagccttctaccgagctgattgtttcagGATCATGAGTGGAGGCAAGCTGTCACAGCTGCCGGATCAGGCTGTATGGCAGCATTATCTGTTGAGCGTTATCTCACTGCTAACGACCTGCTTGTAGAGT
species | Physcomitrella patens |
transcript | PP1S9_92V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GAACGACCAATACATCGGTCGAAGGAGTTTATGCCGCTGGAGATCTTCAG GATCATGAGTGGAGGCAAGCTGTCACAGCTGCCGGATCANGCTGTATGGCAEST: gi|162163288|gb|FC339406.1|FC339406
genomic: GAACGACCAATACATCGGTCGAAGGAGTTTATGCCGCTGGAGATCTTCAGgtacttgact ... attgtttcagGATCATGAGTGGAGGCAAGCTGTCACAGCTGCCGGATCAGGCTGTATGGCA
EST: GAACGACCAATACATCGGTCGAAGGAGTTTATGCCGCTGGAGATCTTCAG GATCATGAGTGGAGGCAAGCTGTCACAGCTGCCGGATCAGGCTGTATGGCAEST: gi|162153422|gb|FC329308.1|FC329308
genomic: GAACGACCAATACATCGGTCGAAGGAGTTTATGCCGCTGGAGATCTTCAGgtacttgact ... attgtttcagGATCATGAGTGGAGGCAAGCTGTCACAGCTGCCGGATCAGGCTGTATGGCA
EST: GAACGACCAATACATCGGTCGAAGGAGTTTATGCCGCTGGAGATCTTCAG GATCATGAGTGGAGGCAAGCTGTCACAGCTGCCGGATCAGGCTGTATGGCAEST: gi|162167745|gb|FC344059.1|FC344059
genomic: GAACGACCAATACATCGGTCGAAGGAGTTTATGCCGCTGGAGATCTTCAGgtacttgact ... attgtttcagGATCATGAGTGGAGGCAAGCTGTCACAGCTGCCGGATCAGGCTGTATGGCA
EST: GAACGACCAATACATCGGTCGAAGGAGTTTATGCCGCTGGAGATCTTCAG GATCATGAGTGGAGGCAAGCTGTCACAGCTGCCGGATCAGGCTGTATGGCAEST: gi|162243800|gb|FC421869.1|FC421869
genomic: GAACGACCAATACATCGGTCGAAGGAGTTTATGCCGCTGGAGATCTTCAGgtacttgact ... attgtttcagGATCATGAGTGGAGGCAAGCTGTCACAGCTGCCGGATCAGGCTGTATGGCA
EST: GAACGACCAATACATCGGTCGAAGGAGTTTATGCCGCTGGAGATCTTCAG GATCATGAGTGGAGGCAAGCTGTCACAGCTGCCGGATCAGGCTGTATGGCAEST: gi|162160157|gb|FC337054.1|FC337054
genomic: GAACGACCAATACATCGGTCGAAGGAGTTTATGCCGCTGGAGATCTTCAGgtacttgact ... attgtttcagGATCATGAGTGGAGGCAAGCTGTCACAGCTGCCGGATCAGGCTGTATGGCA
EST: GAACGACCAATACATCGGTCGAAGGAGTTTATGCCGCTGGAGATCTTCAG GATCATGAGTGGAGGCAAGCTGTCACAGCTGCCGGATCAGGCTGTATGGCA
genomic: GAACGACCAATACATCGGTCGAAGGAGTTTATGCCGCTGGAGATCTTCAGgtacttgact ... attgtttcagGATCATGAGTGGAGGCAAGCTGTCACAGCTGCCGGATCAGGCTGTATGGCA
attagtctgatgttgatgagtattaagaagccttctaccgagctgattgtttcagGATCATGAGTGGAGGCAAGCTGTCACAGCTGCCGGATCAGGCTGTATGGCAGCATTATCTGTTGAGCGTTATCTCACTGCTAACGACCTGCTTGTAGAGT
agctgat putative branch site (score: 8)
ttgtttc CT-rich tract
tattaagaa TA-rich tract