1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tagtgagtgggtttcgaccaatgtaggcggagaatacactgtatagctggtattgagatgacacatgcagccaacctatattgtgggtatgtgaatgcagTATGCGCTTCGGAAGCTTTACCACGAGAGTCCTCGCGTCATTGGTGTACTTTACACTTCACCGACTTGCGGTCCATGCAGATCTCTCAAGCCAATTTTGA
species | Physcomitrella patens |
transcript | PP1S9_92V6.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AGGATATCGAGGAGAAATTCGACATCACAAATACCAAACACAAAGGCCAG TATGCGCTTCGGAAGCTTTACEST: gi|162153422|gb|FC329308.1|FC329308
genomic: AGGATATCGAGGAGAAATTCGACATCACAAATACCAAACACAAAGGCCAGgtgctgaata ... gtgaatgcagTATGCGCTTCGGAAGCTTTAC
EST: AGGATATCGAGGAGAAATTCGACATCACAAATACCAAACACAAAGGCCAG TATGCGCTTCGGAAGCTTTACCACGAGAGTCCTCGCGTCATTGGTGTACTTEST: gi|162167745|gb|FC344059.1|FC344059
genomic: AGGATATCGAGGAGAAATTCGACATCACAAATACCAAACACAAAGGCCAGgtgctgaata ... gtgaatgcagTATGCGCTTCGGAAGCTTTACCACGAGAGTCCTCGCGTCATTGGTGTACTT
EST: AGGATATCGAGGAGAAATTCGACATCACAAATACCAAACACAAAGGCCAG TATGCGCTTCGGAAGCTTTACCACGAGAGTCCTCGCGTCATTGGTGTACTTEST: gi|162243800|gb|FC421869.1|FC421869
genomic: AGGATATCGAGGAGAAATTCGACATCACAAATACCAAACACAAAGGCCAGgtgctgaata ... gtgaatgcagTATGCGCTTCGGAAGCTTTACCACGAGAGTCCTCGCGTCATTGGTGTACTT
EST: AGGATATCGAGGAGAAATTCGACATCACANATACCAAACACAAAGGCCAG TATGCGCTTCGGAAGCTTTACCACGAGAGTCCTCGCGTCATTGGTGTACTT
genomic: AGGATATCGAGGAGAAATTCGACATCACAAATACCAAACACAAAGGCCAGgtgctgaata ... gtgaatgcagTATGCGCTTCGGAAGCTTTACCACGAGAGTCCTCGCGTCATTGGTGTACTT
gctggtattgagatgacacatgcagccaacctatattgtgggtatgtgaatgcagTATGCGCTTCGGAAGCTTTACCACGAGAGTCCTCGCGTCATTGGTGTACTTTACACTTCACCGACTTGCGGTCCATGCAGATCTCTCAAGCCAATTTTGA
tatattgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagtgagtgggtttcgaccaatgtaggcggagaatacactgtatagctggtattgagatgacacatgcagccaacctatattgtgggtatgtgaatgcagTATGCGCTTCGGAAGCTTTACCACGAGAGTCCTCGCGTCATTGGTGTACTTTACACTTCACCGACTTGCGGTCCATGCAGATCTCTCAAGCCAATTTTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacatgc