1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GGAAGGCCAAGTCGAGCTCGATGATGCTAGTTATGTGGTTGTTGAGCCTGGAACGACCAATACATCGGTCGAAGGAGTTTATGCCGCTGGAGATCTTCAGgtacttgactggtcgttagtttcttgcgttcgttcaatttgatgctctacattgctttgcgttttccatgttgctcgtcgttgttatttagtctatctgc...
species | Physcomitrella patens |
transcript | PP1S9_92V6.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GAACGACCAATACATCGGTCGAAGGAGTTTATGCCGCTGGAGATCTTCAG GATCATGAGTGGAGGCAAGCTGTCACAGCTGCCGGATCANGCTGTATGGCAEST: gi|162163288|gb|FC339406.1|FC339406
genomic: GAACGACCAATACATCGGTCGAAGGAGTTTATGCCGCTGGAGATCTTCAGgtacttgact ... attgtttcagGATCATGAGTGGAGGCAAGCTGTCACAGCTGCCGGATCAGGCTGTATGGCA
EST: GAACGACCAATACATCGGTCGAAGGAGTTTATGCCGCTGGAGATCTTCAG GATCATGAGTGGAGGCAAGCTGTCACAGCTGCCGGATCAGGCTGTATGGCAEST: gi|162153422|gb|FC329308.1|FC329308
genomic: GAACGACCAATACATCGGTCGAAGGAGTTTATGCCGCTGGAGATCTTCAGgtacttgact ... attgtttcagGATCATGAGTGGAGGCAAGCTGTCACAGCTGCCGGATCAGGCTGTATGGCA
EST: GAACGACCAATACATCGGTCGAAGGAGTTTATGCCGCTGGAGATCTTCAG GATCATGAGTGGAGGCAAGCTGTCACAGCTGCCGGATCAGGCTGTATGGCAEST: gi|162167745|gb|FC344059.1|FC344059
genomic: GAACGACCAATACATCGGTCGAAGGAGTTTATGCCGCTGGAGATCTTCAGgtacttgact ... attgtttcagGATCATGAGTGGAGGCAAGCTGTCACAGCTGCCGGATCAGGCTGTATGGCA
EST: GAACGACCAATACATCGGTCGAAGGAGTTTATGCCGCTGGAGATCTTCAG GATCATGAGTGGAGGCAAGCTGTCACAGCTGCCGGATCAGGCTGTATGGCAEST: gi|162243800|gb|FC421869.1|FC421869
genomic: GAACGACCAATACATCGGTCGAAGGAGTTTATGCCGCTGGAGATCTTCAGgtacttgact ... attgtttcagGATCATGAGTGGAGGCAAGCTGTCACAGCTGCCGGATCAGGCTGTATGGCA
EST: GAACGACCAATACATCGGTCGAAGGAGTTTATGCCGCTGGAGATCTTCAG GATCATGAGTGGAGGCAAGCTGTCACAGCTGCCGGATCAGGCTGTATGGCAEST: gi|162160157|gb|FC337054.1|FC337054
genomic: GAACGACCAATACATCGGTCGAAGGAGTTTATGCCGCTGGAGATCTTCAGgtacttgact ... attgtttcagGATCATGAGTGGAGGCAAGCTGTCACAGCTGCCGGATCAGGCTGTATGGCA
EST: GAACGACCAATACATCGGTCGAAGGAGTTTATGCCGCTGGAGATCTTCAG GATCATGAGTGGAGGCAAGCTGTCACAGCTGCCGGATCAGGCTGTATGGCA
genomic: GAACGACCAATACATCGGTCGAAGGAGTTTATGCCGCTGGAGATCTTCAGgtacttgact ... attgtttcagGATCATGAGTGGAGGCAAGCTGTCACAGCTGCCGGATCAGGCTGTATGGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAAGGCCAAGTCGAGCTCGATGATGCTAGTTATGTGGTTGTTGAGCCTGGAACGACCAATACATCGGTCGAAGGAGTTTATGCCGCTGGAGATCTTCAGgtacttgactggtcgttagtttcttgcgttcgttcaatttgatgctctacattgctttgcgttttccatgttgctcgtcgttgttatttagtctatctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC