1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tactagtgtccatgtgaccgataattcaattattaataaaaataaattatgtatatcacgaactatacagattgcatcactctgtaattggattgatcagGTGAAACTGGAAGCATCCACGGATACACCAGGTTGCCTTCTGCGCGCTCCGACTGTTGAAGGATTTAAGCCAATATGCACAGATTCGTTTGCTGGAAACT
species | Physcomitrella patens |
transcript | PP1S9_51V6.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AAAATGACAGCTCAANCCAAAACACATGAG GTGAAACTGGAAGCATCCACGGATACACCAGGTTGCCTTCTGCGCGCTCCGEST: gi|67724482|gb|BJ974741.1|BJ974741
genomic: AAAATGACAGCTCAAACCAAAACACATGAGgtatagtcgg ... gattgatcagGTGAAACTGGAAGCATCCACGGATACACCAGGTTGCCTTCTGCGCGCTCCG
EST: TTGCCCCATGGGGATCGTGGAAAATGACAGCTCAAACCAAAACACATGAG GTGAAACTGGAAGCATCCACGGATACACCAGGTTGCCTTCTGCGCGCTCCGEST: gi|19785614|gb|BQ040348.1|BQ040348
genomic: TTGCCCCATGGGGATCGTGGAAAATGACAGCTCAAACCAAAACACATGAGgtatagtcgg ... gattgatcagGTGAAACTGGAAGCATCCACGGATACACCAGGTTGCCTTCTGCGCGCTCCG
EST: TTGCCCCATGGGGATCGTGGAAAATGACAGCTCAAACCAAAACACATGAG GTGAAACTGGAAGCATCCACGGATACACCAGGTTGCCTTCTGCGCGCTCCGEST: gi|37853415|gb|BJ611423.1|BJ611423
genomic: TTGCCCCATGGGGATCGTGGAAAATGACAGCTCAAACCAAAACACATGAGgtatagtcgg ... gattgatcagGTGAAACTGGAAGCATCCACGGATACACCAGGTTGCCTTCTGCGCGCTCCG
EST: TTGCCCCATGGGGATCGTGGAAAATGACAGCTCAANCCAAAACACATGAG GTGAAACTGGAAGCATCCACGGATACACCAGGTTGCCTTCTGCGCGCTCCGEST: gi|37838736|gb|BJ596744.1|BJ596744
genomic: TTGCCCCATGGGGATCGTGGAAAATGACAGCTCAAACCAAAACACATGAGgtatagtcgg ... gattgatcagGTGAAACTGGAAGCATCCACGGATACACCAGGTTGCCTTCTGCGCGCTCCG
EST: TTGCCCCATGGGGATCGTGGAAAATGACAGCTCAAACCAAAACACATGAG GTGAAACTGGAAGCATCCACGGATACACCAGGTTGCCTTCTGCGCGCTCCGEST: gi|208366950|gb|DC951437.1|DC951437
genomic: TTGCCCCATGGGGATCGTGGAAAATGACAGCTCAAACCAAAACACATGAGgtatagtcgg ... gattgatcagGTGAAACTGGAAGCATCCACGGATACACCAGGTTGCCTTCTGCGCGCTCCG
EST: TTGCCCCATGGGGATNGTGGAAAATGACAGCTCAAACCAAAACACATGAG GTGAAACTGGAAGCATCCACGGATACACCAGGTTGCCTTCTGCGCGCTCCGEST: gi|37839619|gb|BJ597627.1|BJ597627
genomic: TTGCCCCATGGGGATCGTGGAAAATGACAGCTCAAACCAAAACACATGAGgtatagtcgg ... gattgatcagGTGAAACTGGAAGCATCCACGGATACACCAGGTTGCCTTCTGCGCGCTCCG
EST: TGCCCCCATGGGGATCGTGGAAAATGACAGCTCAAACCAAAACACATGAG GTGAAACTGGAAGCATCCACGGATACACCAGGTTGCCTTCTGCGCGCTCCG
genomic: TG-CCCCATGGGGATCGTGGAAAATGACAGCTCAAACCAAAACACATGAGgtatagtcgg ... gattgatcagGTGAAACTGGAAGCATCCACGGATACACCAGGTTGCCTTCTGCGCGCTCCG
attatgtatatcacgaactatacagattgcatcactctgtaattggattgatcagGTGAAACTGGAAGCATCCACGGATACACCAGGTTGCCTTCTGCGCGCTCCGACTGTTGAAGGATTTAAGCCAATATGCACAGATTCGTTTGCTGGAAACT
tatatca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tactagtgtccatgtgaccgataattcaattattaataaaaataaattatgtatatcacgaactatacagattgcatcactctgtaattggattgatcagGTGAAACTGGAAGCATCCACGGATACACCAGGTTGCCTTCTGCGCGCTCCGACTGTTGAAGGATTTAAGCCAATATGCACAGATTCGTTTGCTGGAAACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA