1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...attagtttcactgaatttaagtaagcaatagcaggcacttcgacacaacttgaagaatgtgctgcaagttaaacttactagaattactatctttttgcagGTAGCAGTACACTTCGAGGGAAAATTTTATGAGTTCGTTCCATGGGAGGGTAAGGTCGAGTGGGATATTGCCCCATGGGGATCGTGGAAAATGACAGCTC
species | Physcomitrella patens |
transcript | PP1S9_51V6.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AGATACGTTTGAGGACGTCGCTNTG GTAGCAGTACACTTCGAGGGAAAATTTTATGAGTTCGTTCCATGGGAGGGTEST: gi|100353188|gb|BY945650.1|BY945650
genomic: AGATACGTTTGAGGACGTCGCTCTGgtgagcttaa ... ctttttgcagGTAGCAGTACACTTCGAGGGAAAATTTTATGAGTTCGTTCCATGGGAGGGT
EST: GTAGACGAGGACTTCCCCTTCTAAAAGATACGTTTGAGGACGTCGCTCTG GTAGCAGTACACTTCGAGGGAAAATTTTATGAGTTCGTTCCATGGGAGEST: gi|208366950|gb|DC951437.1|DC951437
genomic: GTAGACGAGGACTTCCCCTTCTAAAAGATACGTTTGAGGACGTCGCTCTGgtgagcttaa ... ctttttgcagGTAGCAGTACACTTCGAGGGAAAATTTTATGAGTTCGTTCCATGGGAG
EST: GTAGACGAGGACTTCCCCTTCTAAAAGATACGTTTGAGGACGTCGCTATG GTAGCAGTACACTTCGAGGGAAAATTTTATGAGTTCGTTCCATGGGAGGGT
genomic: GTAGACGAGGACTTCCCCTTCTAAAAGATACGTTTGAGGACGTCGCTCTGgtgagcttaa ... ctttttgcagGTAGCAGTACACTTCGAGGGAAAATTTTATGAGTTCGTTCCATGGGAGGGT
caacttgaagaatgtgctgcaagttaaacttactagaattactatctttttgcagGTAGCAGTACACTTCGAGGGAAAATTTTATGAGTTCGTTCCATGGGAGGGTAAGGTCGAGTGGGATATTGCCCCATGGGGATCGTGGAAAATGACAGCTC
aacttac putative branch site (score: 8)
ctatcttttt putative PPT
aattactatcttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attagtttcactgaatttaagtaagcaatagcaggcacttcgacacaacttgaagaatgtgctgcaagttaaacttactagaattactatctttttgcagGTAGCAGTACACTTCGAGGGAAAATTTTATGAGTTCGTTCCATGGGAGGGTAAGGTCGAGTGGGATATTGCCCCATGGGGATCGTGGAAAATGACAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctgca