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...ctcggtagagaatatctaacattatccgctaccaactaaatagcctactgaacaggcgagattgtgagaaagcaccatgacttgttttggaaccatccagGTGCTTTCGAGATGAAGACTTAAGGGCGGATAGGCAACCAGAGTTTACACAGCTAGATTTGGAGCTTTCTTTTACACCTCTTGAGGATATGCTGGAGCTC
species | Physcomitrella patens |
transcript | PP1S9_39V6.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AAGCAGATGCTCATGGTTTCAGGGTTCAACAGATACTATCAACTAGCCAG GTGCTTTCGAGATGAAGACTTAAGGGCTGATAGGCAACCAGAGTTTACACAEST: gi|162174743|gb|FC352159.1|FC352159
genomic: AAGCAGATGCTCATGGTTTCAGGGTTCAACAGATACTATCAACTAGCCAGgtaacttttt ... aaccatccagGTGCTTTCGAGATGAAGACTTAAGGGCGGATAGGCAACCAGAGTTTACACA
EST: AAGCAGATGCTCATGGTTTCAGGGTTCAACAGATACTATCAACTAGCCAG GTGCTTTCGAGATGAAGACTTAAGGGCTGATAGGCAACCAGAGTTTACACAEST: gi|162149974|gb|FC326505.1|FC326505
genomic: AAGCAGATGCTCATGGTTTCAGGGTTCAACAGATACTATCAACTAGCCAGgtaacttttt ... aaccatccagGTGCTTTCGAGATGAAGACTTAAGGGCGGATAGGCAACCAGAGTTTACACA
EST: AAGCAGATGCTCATGGTTTCAGGGTTCAACAGATACTATCAACTAGCCAG GTGCTTTCGAGATGAAGACTTAAGGGCTGATAGGCAACCAGAGTTTACACAEST: gi|162175866|gb|FC351544.1|FC351544
genomic: AAGCAGATGCTCATGGTTTCAGGGTTCAACAGATACTATCAACTAGCCAGgtaacttttt ... aaccatccagGTGCTTTCGAGATGAAGACTTAAGGGCGGATAGGCAACCAGAGTTTACACA
EST: AAGCAGATGCTCATGGTTTCAGGGTTCAACAGATACTATCAACTAGCCAG GTGCTTTCGAGATGAAGACTTAAGGGCTGATAGGCAACCAGAGTTTACACAEST: gi|162195380|gb|FC369822.1|FC369822
genomic: AAGCAGATGCTCATGGTTTCAGGGTTCAACAGATACTATCAACTAGCCAGgtaacttttt ... aaccatccagGTGCTTTCGAGATGAAGACTTAAGGGCGGATAGGCAACCAGAGTTTACACA
EST: AAGCAGATGCTCATGGTTTCAGGGTTCAACAGATACTATCAACTAGCCAG GTGCTTTCGAGATGAAGACTTAAGGGCTGATAGGCAACCAGAGTTTACACAEST: gi|162185588|gb|FC362014.1|FC362014
genomic: AAGCAGATGCTCATGGTTTCAGGGTTCAACAGATACTATCAACTAGCCAGgtaacttttt ... aaccatccagGTGCTTTCGAGATGAAGACTTAAGGGCGGATAGGCAACCAGAGTTTACACA
EST: AAGCAGATGCTCATGGTTTCAGGGTTCAACAGATACTATCAACTAGCCAG GTGCTTTCGAGATGAAGACTTAAGGGCTGATAGGCAACCAGAGTTTACACA
genomic: AAGCAGATGCTCATGGTTTCAGGGTTCAACAGATACTATCAACTAGCCAGgtaacttttt ... aaccatccagGTGCTTTCGAGATGAAGACTTAAGGGCGGATAGGCAACCAGAGTTTACACA
tactgaacaggcgagattgtgagaaagcaccatgacttgttttggaaccatccagGTGCTTTCGAGATGAAGACTTAAGGGCGGATAGGCAACCAGAGTTTACACAGCTAGATTTGGAGCTTTCTTTTACACCTCTTGAGGATATGCTGGAGCTC
ttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctcggtagagaatatctaacattatccgctaccaactaaatagcctactgaacaggcgagattgtgagaaagcaccatgacttgttttggaaccatccagGTGCTTTCGAGATGAAGACTTAAGGGCGGATAGGCAACCAGAGTTTACACAGCTAGATTTGGAGCTTTCTTTTACACCTCTTGAGGATATGCTGGAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT