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gtgctttacttcctattatcgggactcaccgtgtttctacctgtagatttgggacatttttatccatttttgagttctgcatattcttcttttaattcgggacatctgcaggcttgcatcatgcagagctatatgtttcagtttcagtactcacttacaattgtgcgatctgtggttgatgtatcagAGTGCGCATGCTATACTCTGGGTTACGGATTTTCCCATGTTTGAATGGAATGAAGATGAACAAAGGCTTGAG
species | Physcomitrella patens |
transcript | PP1S9_39V6.2 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TTGATGCCCTTCGTACTTATCTTGCTGACAACTTGGACATCGTTGACAAG AGTGCGCATGCTATACTCTGGGTTACGGATTTTCCCATGTTTGAATGGAATEST: gi|162279498|gb|FC455302.1|FC455302
genomic: TTGATGCCCTTCGTACTTATCTTGCTGACAACTTGGACATCGTTGACAAGgtgctttact ... gatgtatcagAGTGCGCATGCTATACTCTGGGTTACGGATTTTCCCATGTTTGAATGGAAT
EST: TTGATGCCCTTCGTACTTATCTTGCTGACAACTTGGACATCGTTGACAAG AGTGCGCATGCTATACTCTGGGTTACGGATTTTCCCATGTTTGAATGGAATEST: gi|162174742|gb|FC352158.1|FC352158
genomic: TTGATGCCCTTCGTACTTATCTTGCTGACAACTTGGACATCGTTGACAAGgtgctttact ... gatgtatcagAGTGCGCATGCTATACTCTGGGTTACGGATTTTCCCATGTTTGAATGGAAT
EST: TTGATGCCCTTCGTACTTATCTTGCTGACAACTTGGACATCGTTGACAAG AGTGCGCATGCTATACTCTGGGTTACGGATTTTCCCATGTTTGAATGGAATEST: gi|162279497|gb|FC455301.1|FC455301
genomic: TTGATGCCCTTCGTACTTATCTTGCTGACAACTTGGACATCGTTGACAAGgtgctttact ... gatgtatcagAGTGCGCATGCTATACTCTGGGTTACGGATTTTCCCATGTTTGAATGGAAT
EST: TTGATGCCCTTCGTACTTATCTTGCTGACAACTTGGACATCGTTGACAAG AGTGCGCATGCTATACTCTGGGTTACGGATTTTCCCATGTTTGAATGGAAT
genomic: TTGATGCCCTTCGTACTTATCTTGCTGACAACTTGGACATCGTTGACAAGgtgctttact ... gatgtatcagAGTGCGCATGCTATACTCTGGGTTACGGATTTTCCCATGTTTGAATGGAAT
atgtttcagtttcagtactcacttacaattgtgcgatctgtggttgatgtatcagAGTGCGCATGCTATACTCTGGGTTACGGATTTTCCCATGTTTGAATGGAATGAAGATGAACAAAGGCTTGAG
ttacaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgctttacttcctattatcgggactcaccgtgtttctacctgtagatttgggacatttttatccatttttgagttctgcatattcttcttttaattcgggacatctgcaggcttgcatcatgcagagctatatgtttcagtttcagtactcacttacaattgtgcgatctgtggttgatgtatcagAGTGCGCATGCTATACTCTGGGTTACGGATTTTCCCATGTTTGAATGGAATGAAGATGAACAAAGGCTTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG