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gtacgagaatgcggtggtccttctaattgtacacgtttgtgaacatcatttcgaagatctcatgagagtggttctcaaagtcctatcatttcctctccctttgaacgtttgcaccttctggaaatggcagGTCAAATCAGATCCGGACAACTTCCCTGATTGTCATGAAACCGCCCAACACGTGCGTGTTGAGTACGTGGTAGCAGTTGAGGGTACTGTGCAGCTCAGAC
species | Physcomitrella patens |
transcript | PP1S9_39V6.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCGTTTGTTAATTTGCGGGACCACTCCGGAATTGTGCAG GTCAAATCAGATCCGGACAACTTCCCTGATTGTCATGAAACCGCCCAACACEST: gi|162149974|gb|FC326505.1|FC326505
genomic: GCGTTTGTTAATTTGCGGGACCACTCCGGAATTGTGCAGgtacgagaat ... gaaatggcagGTCAAATCAGATCCGGACAACTTCCCTGATTGTCATGAAACCGCCCAACAC
EST: ACGGGGCTATTGCGTTTGTTAATTTGCGGGACCACTCCGGAATTGTGCAG GTCAAATCAGATCCGGACAACTTCCCTGATTGTCATGAAACCGCCCAACACEST: gi|162175866|gb|FC351544.1|FC351544
genomic: ACGGGGCTATTGCGTTTGTTAATTTGCGGGACCACTCCGGAATTGTGCAGgtacgagaat ... gaaatggcagGTCAAATCAGATCCGGACAACTTCCCTGATTGTCATGAAACCGCCCAACAC
EST: ACGGGGCTATTGCGTTTGTTAATTTGCGGGACCACTCCGGAATTGTGCAG GTCAAATCAGATCCGGACAACTTCCCTGATTGTCATGAAACCGCCCAACACEST: gi|162195380|gb|FC369822.1|FC369822
genomic: ACGGGGCTATTGCGTTTGTTAATTTGCGGGACCACTCCGGAATTGTGCAGgtacgagaat ... gaaatggcagGTCAAATCAGATCCGGACAACTTCCCTGATTGTCATGAAACCGCCCAACAC
EST: ACGGGGCTATTGCGTTTGTTAATTTGCGGGACCACTCCGGAATTGTGCAG GTCAAATCAGATCCGGACAACTTCCCTGATTGTCATGAAACCGCCCAACAC
genomic: ACGGGGCTATTGCGTTTGTTAATTTGCGGGACCACTCCGGAATTGTGCAGgtacgagaat ... gaaatggcagGTCAAATCAGATCCGGACAACTTCCCTGATTGTCATGAAACCGCCCAACAC
caaagtcctatcatttcctctccctttgaacgtttgcaccttctggaaatggcagGTCAAATCAGATCCGGACAACTTCCCTGATTGTCATGAAACCGCCCAACACGTGCGTGTTGAGTACGTGGTAGCAGTTGAGGGTACTGTGCAGCTCAGAC
tatcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgagaatgcggtggtccttctaattgtacacgtttgtgaacatcatttcgaagatctcatgagagtggttctcaaagtcctatcatttcctctccctttgaacgtttgcaccttctggaaatggcagGTCAAATCAGATCCGGACAACTTCCCTGATTGTCATGAAACCGCCCAACACGTGCGTGTTGAGTACGTGGTAGCAGTTGAGGGTACTGTGCAGCTCAGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA