1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
TCAAAAATATCAGCTACAAGGTTAAAGAAAGGAGATGTATATCAACAAGCTATTAAGTCGGGAGCTAAAGGCTTACCTTATGTGAAGGTCTTGGCAGGCGgtagagtttatcacaattcctttatgccttatttttcctattaaacctgcagcagggtcatcagtcctaccaacaccacagaagaatcacttacgtcata...
species | Physcomitrella patens |
transcript | PP1S9_39V6.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: TATTAAGTCGGGAGCTAAAGGCTTACCTTATGTGAAGGTCTTGGCAGGCG GTGAACTTGAGGGGCCTCCTGCTCTTGTTGGAAGCTTAAGCCCGGAGAAGAEST: gi|162279498|gb|FC455302.1|FC455302
genomic: TATTAAGTCGGGAGCTAAAGGCTTACCTTATGTGAAGGTCTTGGCAGGCGgtagagttta ... tgccatgcagGTGAACTTGAGGGGCCTCCTGCTCTTGTTGGAAGCTTAAGCCCGGAGAAGA
EST: TATTAAGTCGGGAGCTAAAGGCTTACCTTATGTGAAGGTCTTGGCAGGCG GTGAACTTGAGGGGCCTCCTGCTCTTGTTGGAAGCTTAAGCCCGGAGAAGAEST: gi|162174742|gb|FC352158.1|FC352158
genomic: TATTAAGTCGGGAGCTAAAGGCTTACCTTATGTGAAGGTCTTGGCAGGCGgtagagttta ... tgccatgcagGTGAACTTGAGGGGCCTCCTGCTCTTGTTGGAAGCTTAAGCCCGGAGAAGA
EST: ATGTGAAGGTCTTGGCAGGCG GTGAACTTGAGGGGCCTCCTGCTCTTGTTGGAAGCTTAAGCCCGGAGAAGAEST: gi|162185588|gb|FC362014.1|FC362014
genomic: ATGTGAAGGTCTTGGCAGGCGgtagagttta ... tgccatgcagGTGAACTTGAGGGGCCTCCTGCTCTTGTTGGAAGCTTAAGCCCGGAGAAGA
EST: TATTAAGTCGGGAGCTAAAGGCTTACCTTATGTGAAGGTCTTGGCAGGCG GTGAACTTGAGGGGCCTCCTGCTCTTGTTGGAAGCTTAAGCC
genomic: TATTAAGTCGGGAGCTAAAGGCTTACCTTATGTGAAGGTCTTGGCAGGCGgtagagttta ... tgccatgcagGTGAACTTGAGGGGCCTCCTGCTCTTGTTGGAAGCTTAAGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCAAAAATATCAGCTACAAGGTTAAAGAAAGGAGATGTATATCAACAAGCTATTAAGTCGGGAGCTAAAGGCTTACCTTATGTGAAGGTCTTGGCAGGCGgtagagtttatcacaattcctttatgccttatttttcctattaaacctgcagcagggtcatcagtcctaccaacaccacagaagaatcacttacgtcata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT