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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttatttaccataatcaaaaccgataaccagtgacatgaggattttgcaaacagatatcgaatactatagtaggagtggcttgtaagaatccagactctcatcttgtctgcgaattttctgtcttcagATAGAGACTCCAATATTGACAAAGTCAACTCCAGAAGGTGCACGCGATTACCTTGTTCCATCTCGTGTACAG

Basic information

species Physcomitrella patens
transcript PP1S9_39V6.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162174743|gb|FC352159.1|FC352159
EST:     TTATCAAGCTCATGCGCAGGCACTTGGAAGATGTTCACGACTTTATTGAG                         ATAGAGACTCCAATATTGACAAAGTCAACTCCAGAAGGTGCACGCGATTAC
genomic: TTATCAAGCTCATGCGCAGGCACTTGGAAGATGTTCACGACTTTATTGAGgttatttacc ... ctgtcttcagATAGAGACTCCAATATTGACAAAGTCAACTCCAGAAGGTGCACGCGATTAC
EST: gi|162149974|gb|FC326505.1|FC326505
EST:     TTATCAAGCTCATGCGCAGGCACTTGGAAGATGTTCACGACTTTATTGAG                         ATAGAGACTCCAATATTGACAAAGTCAACTCCAGAAGGTGCACGCGATTAC
genomic: TTATCAAGCTCATGCGCAGGCACTTGGAAGATGTTCACGACTTTATTGAGgttatttacc ... ctgtcttcagATAGAGACTCCAATATTGACAAAGTCAACTCCAGAAGGTGCACGCGATTAC
EST: gi|162175866|gb|FC351544.1|FC351544
EST:     TTATCAAGCTCATGCGCAGGCACTTGGAAGATGTTCACGACTTTATTGAG                         ATAGAGACTCCAATATTGACAAAGTCAACTCCAGAAGGTGCACGCGATTAC
genomic: TTATCAAGCTCATGCGCAGGCACTTGGAAGATGTTCACGACTTTATTGAGgttatttacc ... ctgtcttcagATAGAGACTCCAATATTGACAAAGTCAACTCCAGAAGGTGCACGCGATTAC
EST: gi|162195380|gb|FC369822.1|FC369822
EST:     TTATCAAGCTCATGCGCAGGCACTTGGAAGATGTTCACGACTTTATTGAG                         ATAGAGACTCCAATATTGACAAAGTCAACTCCAGAAGGTGCACGCGATTAC
genomic: TTATCAAGCTCATGCGCAGGCACTTGGAAGATGTTCACGACTTTATTGAGgttatttacc ... ctgtcttcagATAGAGACTCCAATATTGACAAAGTCAACTCCAGAAGGTGCACGCGATTAC
EST: gi|162185588|gb|FC362014.1|FC362014
EST:     TTATCAAGCTCATGCGCAGGCACTTGGAAGATGTTCACGACTTTATTGAG                         ATAGAGACTCCAATATTGACAAAGTCAACTCCAGAAGGTGCACGCGATTAC
genomic: TTATCAAGCTCATGCGCAGGCACTTGGAAGATGTTCACGACTTTATTGAGgttatttacc ... ctgtcttcagATAGAGACTCCAATATTGACAAAGTCAACTCCAGAAGGTGCACGCGATTAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gagtggcttgtaagaatccagactctcatcttgtctgcgaattttctgtcttcagATAGAGACTCCAATATTGACAAAGTCAACTCCAGAAGGTGCACGCGATTACCTTGTTCCATCTCGTGTACAG
                                         ttttctgtcttc  CT-rich tract
                                       aattttct  TA-rich tract