1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...tttacattattaaaacataacgatatctatttcagttaaagaaattacaaggatttaagctgaattactgagattttcgtttcctacatgtgaacggcagGCAATTTGCAAGATGGTTCGACAGCAGGCACAGCCTTACATTGATAAATATGGGCCACAGTACAAGATGGATTCTATCGAGTTCCAGTCACTTACCTTGG
species | Physcomitrella patens |
transcript | PP1S9_391V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGGATTGGGTGAACAGGTTCTTAAAGGACATCTGGCCTTATCTTGATAAG GCAATTTGCAAGATGGTTCGACAGCAGGCACAGCCTTACATTGATAAATATEST: gi|100355079|gb|BY964990.1|BY964990
genomic: TGGATTGGGTGAACAGGTTCTTAAAGGACATCTGGCCTTATCTTGATAAGgtactacaac ... tgaacggcagGCAATTTGCAAGATGGTTCGACAGCAGGCACAGCCTTACATTGATAAATAT
EST: TGGATTGGGTGAACAGGTTCTTAAAGGACATCTGGCCTTATCTTGATAAG GCAATTTGCAAGATGGTTCGACAGCAGGCACAGCCTTACATTGATAAATATEST: gi|100441261|gb|BY962550.1|BY962550
genomic: TGGATTGGGTGAACAGGTTCTTAAAGGACATCTGGCCTTATCTTGATAAGgtactacaac ... tgaacggcagGCAATTTGCAAGATGGTTCGACAGCAGGCACAGCCTTACATTGATAAATAT
EST: TGGATTGGGTGAACAGGTTCTTAAAGGACATCTGGCCTTATCTTGATAAG GCAATTTGCAAGATGGTTCGACAGCAGGCACAGCCTTACATTGATAAATATEST: gi|100438381|gb|BY979928.1|BY979928
genomic: TGGATTGGGTGAACAGGTTCTTAAAGGACATCTGGCCTTATCTTGATAAGgtactacaac ... tgaacggcagGCAATTTGCAAGATGGTTCGACAGCAGGCACAGCCTTACATTGATAAATAT
EST: TGGATTGGGTGAACAGGTTCTTAAAGGACATCTGGCCTTATCTTGATAAG GCAATTTGCAAGATGGTTCGACAGCAGGCACAGCCTTACATTGATAAATATEST: gi|162267810|gb|FC443800.1|FC443800
genomic: TGGATTGGGTGAACAGGTTCTTAAAGGACATCTGGCCTTATCTTGATAAGgtactacaac ... tgaacggcagGCAATTTGCAAGATGGTTCGACAGCAGGCACAGCCTTACATTGATAAATAT
EST: TGGATTGGGTGAACAGGTTCTTAAAGGACATCTGGCCTTATCTTGATAAG GCAATTTGCAAGATGGTTCGACAGCAGGCACAGCCTTACATTGATAAATATEST: gi|162274567|gb|FC451010.1|FC451010
genomic: TGGATTGGGTGAACAGGTTCTTAAAGGACATCTGGCCTTATCTTGATAAGgtactacaac ... tgaacggcagGCAATTTGCAAGATGGTTCGACAGCAGGCACAGCCTTACATTGATAAATAT
EST: TGGATTGGGTGAACAGGTTCTTAAAGGACATCTGGCCTTATCTTGATAAG GCAATTTGCAAGATGGTTCGACAGCAGGCACAGCCTTACATTGATAAATATEST: gi|100389520|gb|BY988998.1|BY988998
genomic: TGGATTGGGTGAACAGGTTCTTAAAGGACATCTGGCCTTATCTTGATAAGgtactacaac ... tgaacggcagGCAATTTGCAAGATGGTTCGACAGCAGGCACAGCCTTACATTGATAAATAT
EST: TGGATTGGGTGAACAGGTTCTTAAAGGACATCTGGCCTTATCTTGATAAG GCAATTTGCAAGATGGTTCGACAGCAGGCACAGCCTTACATTGATAAATATEST: gi|100364726|gb|BY947877.1|BY947877
genomic: TGGATTGGGTGAACAGGTTCTTAAAGGACATCTGGCCTTATCTTGATAAGgtactacaac ... tgaacggcagGCAATTTGCAAGATGGTTCGACAGCAGGCACAGCCTTACATTGATAAATAT
EST: TGGATTGGGTGAACAGGTTCTTAAAGGACATCTGGCCTTATCTTGATAAG GCAATTTGCAAGATGGTTCGACGGCAGGCACAGCCTTACATTGATAAATAT
genomic: TGGATTGGGTGAACAGGTTCTTAAAGGACATCTGGCCTTATCTTGATAAGgtactacaac ... tgaacggcagGCAATTTGCAAGATGGTTCGACAGCAGGCACAGCCTTACATTGATAAATAT
tacaaggatttaagctgaattactgagattttcgtttcctacatgtgaacggcagGCAATTTGCAAGATGGTTCGACAGCAGGCACAGCCTTACATTGATAAATATGGGCCACAGTACAAGATGGATTCTATCGAGTTCCAGTCACTTACCTTGG
atttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttacattattaaaacataacgatatctatttcagttaaagaaattacaaggatttaagctgaattactgagattttcgtttcctacatgtgaacggcagGCAATTTGCAAGATGGTTCGACAGCAGGCACAGCCTTACATTGATAAATATGGGCCACAGTACAAGATGGATTCTATCGAGTTCCAGTCACTTACCTTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA