1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
AACTGTTCCGCTGTTTAAGAATATGGATCCTAATGACGAAGCCAATTCGAAAAAGCGTGGCGAGTTAACGTTTGAAATGAATTTGAGACTCTTCAAGGAAgtaagttttttagtagttgtgattttttttgataagtatgagctacctgaagtttgacaattatgattacgtgagatttatatcaaactcttagaaatgcctcgagaatcatgagtaaccgcgaggtgattgatggtcatcag
species | Physcomitrella patens |
transcript | PP1S9_391V6.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: AAAAGCGTGGCGAGTTAACGTTNGAAATGAATTTGAGACTCTTCAAGGAA GACGATACTGAGGAAGATATCAAAGCGAAATCAATGGATGATGGACAATTCEST: gi|162274566|gb|FC451009.1|FC451009
genomic: AAAAGCGTGGCGAGTTAACGTTTGAAATGAATTTGAGACTCTTCAAGGAAgtaagttttt ... tggtcatcagGACGATACTGAGGAAGATATCAAAGCGAAATCAATGGATGATGGACAATTC
EST: AAAAGCGTGGCGAGTTAACGTCTGAAATGAATTTGAGACTCTTCAAGGAA GACGATACTGAGGAAGATATCAAAGCGAAATCAATGGATGATGGACAATTCEST: gi|162267809|gb|FC443799.1|FC443799
genomic: AAAAGCGTGGCGAGTTAACGTTTGAAATGAATTTGAGACTCTTCAAGGAAgtaagttttt ... tggtcatcagGACGATACTGAGGAAGATATCAAAGCGAAATCAATGGATGATGGACAATTC
EST: AAAAGCGTGGCGAGTTAACGTTTGAAATGAATTTGAGACTCTTCAAGGAA GACGATACTGAGGAAGATATCAAAGCGAAATCAATGGATGATGGACAATTCEST: gi|18334682|gb|BJ166699.1|BJ166699
genomic: AAAAGCGTGGCGAGTTAACGTTTGAAATGAATTTGAGACTCTTCAAGGAAgtaagttttt ... tggtcatcagGACGATACTGAGGAAGATATCAAAGCGAAATCAATGGATGATGGACAATTC
EST: AAAAGCGTGGCGAGTTAACGTTTGAAATGAATTTGAGACTCTTCAAGGAA GACGATACTGAGGAAGATATCAAAGCGAAATCAATGGATGATGGACAATTC
genomic: AAAAGCGTGGCGAGTTAACGTTTGAAATGAATTTGAGACTCTTCAAGGAAgtaagttttt ... tggtcatcagGACGATACTGAGGAAGATATCAAAGCGAAATCAATGGATGATGGACAATTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AACTGTTCCGCTGTTTAAGAATATGGATCCTAATGACGAAGCCAATTCGAAAAAGCGTGGCGAGTTAACGTTTGAAATGAATTTGAGACTCTTCAAGGAAgtaagttttttagtagttgtgattttttttgataagtatgagctacctgaagtttgacaattatgattacgtgagatttatatcaaactcttagaaatgcctcgagaatcatgagtaaccgcgaggtgattgatggtcatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA