1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tggtttgtactaaaaaattgcaactgtattagaataatttggtgcctatttctgactgattgtctttatgaaacttgtgatgaaactttgatgttttcagGGACAGCGGCGGCAACTGCTGTCGCGTCTGTGTCATCACCTGCTGTTGCGCATGTCGACCCAACTGCTGCAGCAAGACACCGGGATGCATCTCGGCTGTC
species | Physcomitrella patens |
transcript | PP1S9_37V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGATTAAGAGGAAGGCTTGAAGATGTTGCGCAGTATATCAAAGGTCGCAG GGACAGCGGCGGCAACTGCTGTCGCGTCTGTGTCATCACCTGCTGTTGCGCEST: gi|18354449|gb|BJ186505.1|BJ186505
genomic: GGATTAAGAGGAAGGCTTGAAGATGTTGCGCAGTATATCAAAGGTCGCAGgtgtgatatc ... atgttttcagGGACAGCGGCGGCAACTGCTGTCGCGTCTGTGTCATCACCTGCTGTTGCGC
EST: GGATTAAGAGGAAGGCTTGAAGATGTTGCGCAGTATATCAAAGGTCGCAG GGACAGCGGCGGCAACTGCTGTCGCGTCTGTGTCATCACCTGCTGTTGCGCEST: gi|208356450|gb|DC914312.1|DC914312
genomic: GGATTAAGAGGAAGGCTTGAAGATGTTGCGCAGTATATCAAAGGTCGCAGgtgtgatatc ... atgttttcagGGACAGCGGCGGCAACTGCTGTCGCGTCTGTGTCATCACCTGCTGTTGCGC
EST: GGATTAAGAGGAAGGCTTGAAGATGTTGCGCAGTATATCAAAGGTCGCAG GGACAGCGGCGGCAACTGCTGTCGCGTCTGTGTCATCACCTGCTGTTGCGCEST: gi|100404598|gb|BY973658.1|BY973658
genomic: GGATTAAGAGGAAGGCTTGAAGATGTTGCGCAGTATATCAAAGGTCGCAGgtgtgatatc ... atgttttcagGGACAGCGGCGGCAACTGCTGTCGCGTCTGTGTCATCACCTGCTGTTGCGC
EST: GGATTAAGAGGAAGGCTTGAAGATGTTGCGCAGTATATCAAAGGTCGCAG GGACAGCGGCGGCAACTGCTGTCGCGTCTGTGTCATCACCTGCTGTTGCGCEST: gi|100432147|gb|BY960358.1|BY960358
genomic: GGATTAAGAGGAAGGCTTGAAGATGTTGCGCAGTATATCAAAGGTCGCAGgtgtgatatc ... atgttttcagGGACAGCGGCGGCAACTGCTGTCGCGTCTGTGTCATCACCTGCTGTTGCGC
EST: GGATTAAGAGGAAGGCTTGAAGATGTTGCGCAGTATATCAAAGGTCGCAG GGACAGCGGCGGCAACTGCTGTCGCGTCTGCGTCATCACCTGCTGTTGCGCEST: gi|162185462|gb|FC361205.1|FC361205
genomic: GGATTAAGAGGAAGGCTTGAAGATGTTGCGCAGTATATCAAAGGTCGCAGgtgtgatatc ... atgttttcagGGACAGCGGCGGCAACTGCTGTCGCGTCTGTGTCATCACCTGCTGTTGCGC
EST: AGGAAGGCTTGAAGATGTTGCGCAGTATATCAAAGGTCGCAG GGACAGCGGCGGCAACTGCTGTCGCGTCTGTGTCATCACCTGCTGTTGCGCEST: gi|18362954|gb|BJ195026.1|BJ195026
genomic: AGGAAGGCTTGAAGATGTTGCGCAGTATATCAAAGGTCGCAGgtgtgatatc ... atgttttcagGGACAGCGGCGGCAACTGCTGTCGCGTCTGTGTCATCACCTGCTGTTGCGC
EST: GGATTAAGAGGAAGGCTTGAAGATGTTGCGCAGTATATCAAAGGTCGCAG GGACAGCGGCGGCAACTGCTGTCGCGTCTGTGTCATCACCTGCTGTTGCGCEST: gi|18327519|gb|BJ159522.1|BJ159522
genomic: GGATTAAGAGGAAGGCTTGAAGATGTTGCGCAGTATATCAAAGGTCGCAGgtgtgatatc ... atgttttcagGGACAGCGGCGGCAACTGCTGTCGCGTCTGTGTCATCACCTGCTGTTGCGC
EST: GGATTAAGAGGAAGGCTTGAAGATGTTGCGCAGTATATCAAAGGTCGCAG GGACAGCGGCGGCAACTGCTGTCGCGTCTGTGTCATCACCTGCTGTTGCGCEST: gi|162196408|gb|FC373554.1|FC373554
genomic: GGATTAAGAGGAAGGCTTGAAGATGTTGCGCAGTATATCAAAGGTCGCAGgtgtgatatc ... atgttttcagGGACAGCGGCGGCAACTGCTGTCGCGTCTGTGTCATCACCTGCTGTTGCGC
EST: GGATTAAGAGGAAGGCTTGAAGATGTTGCGCAGTATATCAAAGGTCGCAG GGACAGCGGCGGCAACTGCTGTCGCGTCTGTGTCATCACCTGCTGTTGCGCEST: gi|100439337|gb|BY980213.1|BY980213
genomic: GGATTAAGAGGAAGGCTTGAAGATGTTGCGCAGTATATCAAAGGTCGCAGgtgtgatatc ... atgttttcagGGACAGCGGCGGCAACTGCTGTCGCGTCTGTGTCATCACCTGCTGTTGCGC
EST: GGATTAAGAGGAAGGCTTGAAGATGTTGCGCAGTATATCAAAGGTCGCAG GGACAGCGGCGGCAACTGCTGTCGCGTCTGTGTCATCACCTGCTGTTGCGCEST: gi|18328795|gb|BJ160801.1|BJ160801
genomic: GGATTAAGAGGAAGGCTTGAAGATGTTGCGCAGTATATCAAAGGTCGCAGgtgtgatatc ... atgttttcagGGACAGCGGCGGCAACTGCTGTCGCGTCTGTGTCATCACCTGCTGTTGCGC
EST: GGATTAAGAGGAAGGCTTGAAGATGTTGCGCAGTATATCAAAGGTCGCAG GGACAGCGGCGGCAACTGCTGTCGCGTCTGTGTCATCACCTGCTGTTGCGC
genomic: GGATTAAGAGGAAGGCTTGAAGATGTTGCGCAGTATATCAAAGGTCGCAGgtgtgatatc ... atgttttcagGGACAGCGGCGGCAACTGCTGTCGCGTCTGTGTCATCACCTGCTGTTGCGC
ctatttctgactgattgtctttatgaaacttgtgatgaaactttgatgttttcagGGACAGCGGCGGCAACTGCTGTCGCGTCTGTGTCATCACCTGCTGTTGCGCATGTCGACCCAACTGCTGCAGCAAGACACCGGGATGCATCTCGGCTGTC
tgttttc CT-rich tract
tttatgaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggtttgtactaaaaaattgcaactgtattagaataatttggtgcctatttctgactgattgtctttatgaaacttgtgatgaaactttgatgttttcagGGACAGCGGCGGCAACTGCTGTCGCGTCTGTGTCATCACCTGCTGTTGCGCATGTCGACCCAACTGCTGCAGCAAGACACCGGGATGCATCTCGGCTGTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA