1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ttgcagtttgggcttaattagtgtagcattgagtatgtcacagttccagtagggtttgtgttggtcgtggtggattgcctcctgatcgtattgttgttagGATCTTGGTCGCAGATCATTGGATTAAGAGGAAGGCTTGAAGATGTTGCGCAGTATATCAAAGGTCGCAG
species | Physcomitrella patens |
transcript | PP1S9_37V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GTTTTACCTTGAACCCAATTCTTAGAATCCCCCTTTCGTTACTTGTTCAC GATCTTGGTCGCAGATCATTGGATTAAGAGGAAGGCTTGAAGATGTTGCGCEST: gi|18354449|gb|BJ186505.1|BJ186505
genomic: GTTTTACCTTGAACCCAATTCTTAGAATCCCCCTTTCGTTACTTGTTCACgtaagcatca ... ttgttgttagGATCTTGGTCGCAGATCATTGGATTAAGAGGAAGGCTTGAAGATGTTGCGC
EST: GTTTTACCTTGAACCCAATTCTTAGAATCCCCCTTTCGTTACTTGTTCAC GATCTTGGTCGCAGATCATTGGATTAAGAGGAAGGCTTGAAGATGTTGCGCEST: gi|100432147|gb|BY960358.1|BY960358
genomic: GTTTTACCTTGAACCCAATTCTTAGAATCCCCCTTTCGTTACTTGTTCACgtaagcatca ... ttgttgttagGATCTTGGTCGCAGATCATTGGATTAAGAGGAAGGCTTGAAGATGTTGCGC
EST: GTTTTACCTTGAACCCAATTCTTAGAATCCCCCTTTCGTTACTTGTTCAC GATCTTGGTCGCAGATCATTGGATTAAGAGGAAGGCTTGAAGATGTTGCGCEST: gi|18362954|gb|BJ195026.1|BJ195026
genomic: GTTTTACCTTGAACCCAATTCTTAGAATCCCCCTTTCGTTACTTGTTCACgtaagcatca ... ttgttgttagGATCTTGGTCGCAGATCATTGGATTAAGAGGAAGGCTTGAAGATGTTGCGC
EST: GTTTTACCTTGAACCCAATTCTTAGAATCCCCCTTTCGTTACTTGTTCAC GATCTTGGTCGCAGATCATTGGATTAAGAGGAAGGCTTGAAGATGTTGCGCEST: gi|18327519|gb|BJ159522.1|BJ159522
genomic: GTTTTACCTTGAACCCAATTCTTAGAATCCCCCTTTCGTTACTTGTTCACgtaagcatca ... ttgttgttagGATCTTGGTCGCAGATCATTGGATTAAGAGGAAGGCTTGAAGATGTTGCGC
EST: GTTTTACCTTGAACCCAATTCTTAGAATCCCCCTTTCGTTACTTGTTCAC GATCTTGGTCGCAGATCATTGGATTAAGAGGAAGGCTTGAAGATGTTGCGCEST: gi|100439337|gb|BY980213.1|BY980213
genomic: GTTTTACCTTGAACCCAATTCTTAGAATCCCCCTTTCGTTACTTGTTCACgtaagcatca ... ttgttgttagGATCTTGGTCGCAGATCATTGGATTAAGAGGAAGGCTTGAAGATGTTGCGC
EST: GTTTTACCTTGAACCCAATTCTTAGAATCCCCCTTTCGTTACTTGTTCAC GATCTTGGTCGCAGATCATTGGATTAAGAGGAAGGCTTGAAGATGTTGCGCEST: gi|18328795|gb|BJ160801.1|BJ160801
genomic: GTTTTACCTTGAACCCAATTCTTAGAATCCCCCTTTCGTTACTTGTTCACgtaagcatca ... ttgttgttagGATCTTGGTCGCAGATCATTGGATTAAGAGGAAGGCTTGAAGATGTTGCGC
EST: GTTTTACCTTGAACCCAATTCTTAGAATCCCCCTTTCGTTACTTGTTCAC GATCTTGGTCGCAGATCATTGGATTAAGAGGAAGGCTTGAAGATGTTGCGC
genomic: GTTTTACCTTGAACCCAATTCTTAGAATCCCCCTTTCGTTACTTGTTCACgtaagcatca ... ttgttgttagGATCTTGGTCGCAGATCATTGGATTAAGAGGAAGGCTTGAAGATGTTGCGC
ccagtagggtttgtgttggtcgtggtggattgcctcctgatcgtattgttgttagGATCTTGGTCGCAGATCATTGGATTAAGAGGAAGGCTTGAAGATGTTGCGCAGTATATCAAAGGTCGCAG
tcctgat putative branch site (score: 3)
tattgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgcagtttgggcttaattagtgtagcattgagtatgtcacagttccagtagggtttgtgttggtcgtggtggattgcctcctgatcgtattgttgttagGATCTTGGTCGCAGATCATTGGATTAAGAGGAAGGCTTGAAGATGTTGCGCAGTATATCAAAGGTCGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG