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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGGGTTTGTTTGTGGATCGAATCAAGTTCACTGTTTTACCTTGAACCCAATTCTTAGAATCCCCCTTTCGTTACTTGTTCACgtaagcatcagcaatcattcctgagttcccctgatcgagcgttgcctttgggttgcgtagggttcaggtttattgcttggaattgagtgagtttggttgg...

Basic information

species Physcomitrella patens
transcript PP1S9_37V6.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100380424|gb|BY986691.1|BY986691
EST:     GTTTTACCTTGAACCCAATTCTTAGAATCCCCCTTTCGTTACTTGTTCAC                         GATCTTGGTCGCAGATCATTGGATTAAGAGGAAGGCTTGAAGATGTTGCGC
genomic: GTTTTACCTTGAACCCAATTCTTAGAATCCCCCTTTCGTTACTTGTTCACgtaagcatca ... ttgttgttagGATCTTGGTCGCAGATCATTGGATTAAGAGGAAGGCTTGAAGATGTTGCGC
EST: gi|18354449|gb|BJ186505.1|BJ186505
EST:     GTTTTACCTTGAACCCAATTCTTAGAATCCCCCTTTCGTTACTTGTTCAC                         GATCTTGGTCGCAGATCATTGGATTAAGAGGAAGGCTTGAAGATGTTGCGC
genomic: GTTTTACCTTGAACCCAATTCTTAGAATCCCCCTTTCGTTACTTGTTCACgtaagcatca ... ttgttgttagGATCTTGGTCGCAGATCATTGGATTAAGAGGAAGGCTTGAAGATGTTGCGC
EST: gi|100432147|gb|BY960358.1|BY960358
EST:     GTTTTACCTTGAACCCAATTCTTAGAATCCCCCTTTCGTTACTTGTTCAC                         GATCTTGGTCGCAGATCATTGGATTAAGAGGAAGGCTTGAAGATGTTGCGC
genomic: GTTTTACCTTGAACCCAATTCTTAGAATCCCCCTTTCGTTACTTGTTCACgtaagcatca ... ttgttgttagGATCTTGGTCGCAGATCATTGGATTAAGAGGAAGGCTTGAAGATGTTGCGC
EST: gi|18362954|gb|BJ195026.1|BJ195026
EST:     GTTTTACCTTGAACCCAATTCTTAGAATCCCCCTTTCGTTACTTGTTCAC                         GATCTTGGTCGCAGATCATTGGATTAAGAGGAAGGCTTGAAGATGTTGCGC
genomic: GTTTTACCTTGAACCCAATTCTTAGAATCCCCCTTTCGTTACTTGTTCACgtaagcatca ... ttgttgttagGATCTTGGTCGCAGATCATTGGATTAAGAGGAAGGCTTGAAGATGTTGCGC
EST: gi|18327519|gb|BJ159522.1|BJ159522
EST:     GTTTTACCTTGAACCCAATTCTTAGAATCCCCCTTTCGTTACTTGTTCAC                         GATCTTGGTCGCAGATCATTGGATTAAGAGGAAGGCTTGAAGATGTTGCGC
genomic: GTTTTACCTTGAACCCAATTCTTAGAATCCCCCTTTCGTTACTTGTTCACgtaagcatca ... ttgttgttagGATCTTGGTCGCAGATCATTGGATTAAGAGGAAGGCTTGAAGATGTTGCGC
EST: gi|100439337|gb|BY980213.1|BY980213
EST:     GTTTTACCTTGAACCCAATTCTTAGAATCCCCCTTTCGTTACTTGTTCAC                         GATCTTGGTCGCAGATCATTGGATTAAGAGGAAGGCTTGAAGATGTTGCGC
genomic: GTTTTACCTTGAACCCAATTCTTAGAATCCCCCTTTCGTTACTTGTTCACgtaagcatca ... ttgttgttagGATCTTGGTCGCAGATCATTGGATTAAGAGGAAGGCTTGAAGATGTTGCGC
EST: gi|18328795|gb|BJ160801.1|BJ160801
EST:     GTTTTACCTTGAACCCAATTCTTAGAATCCCCCTTTCGTTACTTGTTCAC                         GATCTTGGTCGCAGATCATTGGATTAAGAGGAAGGCTTGAAGATGTTGCGC
genomic: GTTTTACCTTGAACCCAATTCTTAGAATCCCCCTTTCGTTACTTGTTCACgtaagcatca ... ttgttgttagGATCTTGGTCGCAGATCATTGGATTAAGAGGAAGGCTTGAAGATGTTGCGC