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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGAGCGGGGCTTGCAATGGCTACAATGGATATCATTAAGCTCAGTGGAGGGACCCCTGCCAATTTCTTGGATGTGGGTGGCAACGCAACTGAGCAACAGgtgtgctttggttccagctcatctgcttgacttagcaatccatcacgttctcgttaacttttggtgtatattcagcttgcaatatggttaagattgaagt...

Basic information

species Physcomitrella patens
transcript PP1S9_103V6.2
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18338652|gb|BJ170676.1|BJ170676
EST:     GGACCCCTGCCAATTTCTTGGATGTGGGTGGCAACGCAACTGAGCAACAG                         GTTGTGGAAGCTTTTAAAATTCTGACTTCCGACACGAGAGTGAAAGCTATT
genomic: GGACCCCTGCCAATTTCTTGGATGTGGGTGGCAACGCAACTGAGCAACAGgtgtgctttg ... gcttgtgcagGTTGTGGAAGCTTTTAAAATTCTGACTTCCGACACGAGAGTGAAAGCTATT
EST: gi|208365272|gb|DC946817.1|DC946817
EST:     GGACCCCTGCCAATTTCTTGGATGTGGGTGGCAACGCAACTGAGCAACAG                         GTTGTGGAAGCTTTTAAAATTCTGACTTCCGACACGAGAGTGAAAGCTATT
genomic: GGACCCCTGCCAATTTCTTGGATGTGGGTGGCAACGCAACTGAGCAACAGgtgtgctttg ... gcttgtgcagGTTGTGGAAGCTTTTAAAATTCTGACTTCCGACACGAGAGTGAAAGCTATT
EST: gi|208352527|gb|DC918236.1|DC918236
EST:     GGACCCCTGCCAATTTCTTGGATGTGGGTGGCAACGCAACTGAGCAACAG                         GTTGTGGAAGCTTTTAAAATTCTGACTTCCGACACGAGAGTGAAAGCTATT
genomic: GGACCCCTGCCAATTTCTTGGATGTGGGTGGCAACGCAACTGAGCAACAGgtgtgctttg ... gcttgtgcagGTTGTGGAAGCTTTTAAAATTCTGACTTCCGACACGAGAGTGAAAGCTATT
EST: gi|67724647|gb|BJ974906.1|BJ974906
EST:     GGACCCCTGCCAATTTCTTGGATGTGGGTGGCAACGCAACTGAGCAACAG                         GTTGTGGAAGCTTTTAAAATTCTGACTTCCGACACGAGAGTGAAAGCTATT
genomic: GGACCCCTGCCAATTTCTTGGATGTGGGTGGCAACGCAACTGAGCAACAGgtgtgctttg ... gcttgtgcagGTTGTGGAAGCTTTTAAAATTCTGACTTCCGACACGAGAGTGAAAGCTATT
EST: gi|18334936|gb|BJ166954.1|BJ166954
EST:     GGACCCCTGCCAATTTCTTGGATGTGGGTGGCAACGCAACTGAGCAACAG                         GTTGTGGAAGCTTTTAAAATTCTGACTTCCGACACGAGAGTGAAAGCTATT
genomic: GGACCCCTGCCAATTTCTTGGATGTGGGTGGCAACGCAACTGAGCAACAGgtgtgctttg ... gcttgtgcagGTTGTGGAAGCTTTTAAAATTCTGACTTCCGACACGAGAGTGAAAGCTATT
EST: gi|67727713|gb|BJ977972.1|BJ977972
EST:     GGACCCCTGCCAATTTCTTGGATGTGGGTGGCAACGCAACTGAGCAACAG                         GTTGTGGAAGCTTTTAAAATTCTGACTTCCGACACGAGAGTGAAAGCTATT
genomic: GGACCCCTGCCAATTTCTTGGATGTGGGTGGCAACGCAACTGAGCAACAGgtgtgctttg ... gcttgtgcagGTTGTGGAAGCTTTTAAAATTCTGACTTCCGACACGAGAGTGAAAGCTATT
EST: gi|208397427|gb|DC916353.1|DC916353
EST:     GGACCCCTGCCAATTTNTTGGATGTGGGTGGCAACGCAACTGAGCAACAG                         GTTGTGGAAGCTTTTAAAATTCTGACTTCCGACACGAGAGTGAAAGCTATT
genomic: GGACCCCTGCCAATTTCTTGGATGTGGGTGGCAACGCAACTGAGCAACAGgtgtgctttg ... gcttgtgcagGTTGTGGAAGCTTTTAAAATTCTGACTTCCGACACGAGAGTGAAAGCTATT
EST: gi|37829801|gb|BJ587813.1|BJ587813
EST:     GGACCCCTGCCAATTTCTTGGATGTGGGTGGCAACGCAACTGAGCAACAG                         GTTGTGGAAGCTTTTAAAATTCTGACTTCCGACACGAGAGTGAAAGCTATT
genomic: GGACCCCTGCCAATTTCTTGGATGTGGGTGGCAACGCAACTGAGCAACAGgtgtgctttg ... gcttgtgcagGTTGTGGAAGCTTTTAAAATTCTGACTTCCGACACGAGAGTGAAAGCTATT
EST: gi|67695119|gb|BJ955352.1|BJ955352
EST:     TTGGATGTGGGTGGCAACGCAACTGAGCAACAG                         GTTGTGGAAGCTTTTAAAATTCTGACTTCCGACACGAGAGTGAAAGCTATT
genomic: TTGGATGTGGGTGGCAACGCAACTGAGCAACAGgtgtgctttg ... gcttgtgcagGTTGTGGAAGCTTTTAAAATTCTGACTTCCGACACGAGAGTGAAAGCTATT