1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...cttatggtggttgttcaagtatgcagtacttacagatactctatgtcaaggggtttaacaagggttgagcttatgttgcatcatctgtatttggtttcagATCAACCCCTTGGCAGAAACGTCAACAGGAGTTATGATGGCCGCCGACGCGAAGCTTAACTTTGATGACAATGCAGCCTTCCGTCAAAAGGAAATCTTTG
species | Physcomitrella patens |
transcript | PP1S9_103V6.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TAAGAAGTTTTACAAGTTGTTCACAGAAACAGACTGGACTCAAGTTGAAG ATCACCCCCTTGGCAGAEST: gi|67727713|gb|BJ977972.1|BJ977972
genomic: -AAGAAGTTTTACAAGTTGTTCACAGAAACAGACTGTACTCAAGTTGA-Ggtataccgtt ... ttggtttcagATCAACCCCTTGGCAGA
EST: TTCACAGAAACAGACTGTACTCAAGTTGAG ATCAACCCCTTGGCAGAAACGTCAACCAGGAGTTATGATGGCCGCCGACGCEST: gi|100379592|gb|BY949846.1|BY949846
genomic: TTCACAGAAACAGACTGTACTCAAGTTGAGgtataccgtt ... ttggtttcagATCAACCCCTTGGCAGAAACGTCAA-CAGGAGTTATGATGGCCGCCGACGC
EST: AAGAAGTTTTACAAAAGT-GT-CACAGAAACAGACTGTACTCAAGTTGAG ATCAACCCCTTGGCAGAAACGTCAAACAGGAGT-ATGATGGCCGCCGACGCEST: gi|37829801|gb|BJ587813.1|BJ587813
genomic: AAGAAGTTTTACAA--GTTGTTCACAGAAACAGACTGTACTCAAGTTGAGgtataccgtt ... ttggtttcagATCAACCCCTTGGCAGAAACGTCAA-CAGGAGTTATGATGGCCGCCGACGC
EST: TCACAGAAACAGACTGTACTCAAGTTGAG ATCAACCCCNTTGGCCAGAAACGTCAACAGGAAGTTATGATGGCCGCCGACEST: gi|100369353|gb|BY948059.1|BY948059
genomic: TCACAGAAACAGACTGTACTCAAGTTGAGgtataccgtt ... ttggtttcagATCAACCCC-TTGG-CAGAAACGTCAACAGG-AGTTATGATGGCCGCCGAC
EST: TTA-GAAGTTTTACA-GTTGTTCACAGAAACAGACTGTACTCAAGTTGAG ATCAACCCCTTGGCAGAEST: gi|100356151|gb|BY946222.1|BY946222
genomic: TTAAGAAGTTTTACAAGTTGTTCACAGAAACAGACTGTACTCAAGTTGAGgtataccgtt ... ttggtttcagATCAACCCCTTGGCAGA
EST: AAGAAGTTTTACAAATTGTTCACAGAACCAAGACTGGACCTCAAGTTGAG ATCAACCCCTTGG
genomic: AAGAAGTTTTACAAGTTGTTCACAGAAACA-GACTGTAC-TCAAGTTGAGgtataccgtt ... ttggtttcagATCAACCCCTTGG
tcaaggggtttaacaagggttgagcttatgttgcatcatctgtatttggtttcagATCAACCCCTTGGCAGAAACGTCAACAGGAGTTATGATGGCCGCCGACGCGAAGCTTAACTTTGATGACAATGCAGCCTTCCGTCAAAAGGAAATCTTTG
gtttaac putative branch site (score: 3)
tttaacaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttatggtggttgttcaagtatgcagtacttacagatactctatgtcaaggggtttaacaagggttgagcttatgttgcatcatctgtatttggtttcagATCAACCCCTTGGCAGAAACGTCAACAGGAGTTATGATGGCCGCCGACGCGAAGCTTAACTTTGATGACAATGCAGCCTTCCGTCAAAAGGAAATCTTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgca