1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtagggattttatccactaagcacaggctgcaaatggtcctggtttcgctctgaatatgctttcatttctcggcaccattttcttgggtattgcttgaccttgtgtacaaactcgaatctgctgactctcgcttggtttgggctacataaattgtcttctacttctccactctagGTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTCTCAGCTTCTACATACTCATATATCTCACTCTTGAAGTATTTTGCCCCTA
species | Physcomitrella patens |
transcript | PP1S99_59V6.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAG GTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTCEST: gi|208367480|gb|DC954940.1|DC954940
genomic: ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAGgtagggattt ... tccactctagGTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
EST: ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAG GTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTCEST: gi|208362286|gb|DC954532.1|DC954532
genomic: ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAGgtagggattt ... tccactctagGTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
EST: ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAG GTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTCEST: gi|208362869|gb|DC950819.1|DC950819
genomic: ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAGgtagggattt ... tccactctagGTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
EST: ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAG GTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTCEST: gi|208372849|gb|DC956250.1|DC956250
genomic: ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAGgtagggattt ... tccactctagGTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
EST: ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAG GTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTCEST: gi|208386432|gb|DC949119.1|DC949119
genomic: ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAGgtagggattt ... tccactctagGTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
EST: ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAG GTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTCEST: gi|208375226|gb|DC948751.1|DC948751
genomic: ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAGgtagggattt ... tccactctagGTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
EST: CATCCTGGTGCATTCACTTGCCAATGGACCTGAG GTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTCEST: gi|208363947|gb|DC950351.1|DC950351
genomic: CATCCTGGTGCATTCACTTGCCAATGGACCTGAGgtagggattt ... tccactctagGTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
EST: ANTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAG GTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTCEST: gi|208397247|gb|DC920876.1|DC920876
genomic: ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAGgtagggattt ... tccactctagGTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
EST: ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAG GTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTCEST: gi|208366289|gb|DC943835.1|DC943835
genomic: ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAGgtagggattt ... tccactctagGTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
EST: ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAG GTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTCEST: gi|208365068|gb|DC943377.1|DC943377
genomic: ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAGgtagggattt ... tccactctagGTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
EST: ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAG GTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTCEST: gi|208363068|gb|DC957995.1|DC957995
genomic: ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAGgtagggattt ... tccactctagGTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
EST: ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAG GTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTCEST: gi|162157331|gb|FC333459.1|FC333459
genomic: ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAGgtagggattt ... tccactctagGTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
EST: ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAG GTAACCAAGCCACTTCTGGAGACCTCTCGEST: gi|162177043|gb|FC353096.1|FC353096
genomic: ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAGgtagggattt ... tccactctagGTAACCAAGCCACTTCTGGAGACCTCTCG
EST: ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAG GTAACCAAGCCACTTCTGGAGACCTCTCGCAAAGGTTATTTGGCAGCAGTCEST: gi|208372302|gb|DC948491.1|DC948491
genomic: ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAGgtagggattt ... tccactctagGTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
EST: ACTTCNGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAG GTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTCEST: gi|208369171|gb|DC956046.1|DC956046
genomic: ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAGgtagggattt ... tccactctagGTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
EST: ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAG GTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTCEST: gi|67723723|gb|BJ973982.1|BJ973982
genomic: ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAGgtagggattt ... tccactctagGTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
EST: ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAG GTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTCEST: gi|208366442|gb|DC947610.1|DC947610
genomic: ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAGgtagggattt ... tccactctagGTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
EST: ACTTCGGCACCANTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAG GTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGCCEST: gi|208370554|gb|DC951590.1|DC951590
genomic: ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAGgtagggattt ... tccactctagGTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
EST: ACTTCGGCACCANTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAG GTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTCEST: gi|208368605|gb|DC947922.1|DC947922
genomic: ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAGgtagggattt ... tccactctagGTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
EST: ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAG GTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTCEST: gi|208390945|gb|DC945934.1|DC945934
genomic: ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAGgtagggattt ... tccactctagGTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
EST: ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAG GTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTCEST: gi|208367603|gb|DC954979.1|DC954979
genomic: ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAGgtagggattt ... tccactctagGTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
EST: ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAG GTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTCEST: gi|208390278|gb|DC949518.1|DC949518
genomic: ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAGgtagggattt ... tccactctagGTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
EST: ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAG GTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTCEST: gi|162280154|gb|FC455963.1|FC455963
genomic: ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAGgtagggattt ... tccactctagGTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
EST: ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAG GTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTCEST: gi|208369757|gb|DC951888.1|DC951888
genomic: ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAGgtagggattt ... tccactctagGTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
EST: ACTTCGGCACCATTGACATCCTGGTGCATTCACNTGCCAATGGACCTGAG GTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTCEST: gi|208381939|gb|DC923449.1|DC923449
genomic: ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAGgtagggattt ... tccactctagGTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
EST: ANTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAG GTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTCEST: gi|208391966|gb|DC949429.1|DC949429
genomic: ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAGgtagggattt ... tccactctagGTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
EST: ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAG GTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTCEST: gi|208387185|gb|DC945484.1|DC945484
genomic: ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAGgtagggattt ... tccactctagGTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
EST: ACTTCGGCACCA-TGACATCCTGGTGCATTCACTTGCCAATGGACCTGAG GTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTCEST: gi|208385469|gb|DC953088.1|DC953088
genomic: ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAGgtagggattt ... tccactctagGTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
EST: ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAG GTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTCEST: gi|208398833|gb|DC920781.1|DC920781
genomic: ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAGgtagggattt ... tccactctagGTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
EST: ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAG GTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTCEST: gi|162280155|gb|FC455964.1|FC455964
genomic: ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAGgtagggattt ... tccactctagGTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
EST: ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAG GTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTCEST: gi|208366370|gb|DC943874.1|DC943874
genomic: ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAGgtagggattt ... tccactctagGTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
EST: ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAG GTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTCEST: gi|208369942|gb|DC944280.1|DC944280
genomic: ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAGgtagggattt ... tccactctagGTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
EST: ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAG GTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTCEST: gi|67725969|gb|BJ976228.1|BJ976228
genomic: ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAGgtagggattt ... tccactctagGTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
EST: ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAG GTAACCAAGCCACTTCTGGAGACCTCACGCAACGGTTATTTGGCAGCAGTCEST: gi|67727485|gb|BJ977744.1|BJ977744
genomic: ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAGgtagggattt ... tccactctagGTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
EST: ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAG GTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTCEST: gi|208372820|gb|DC956221.1|DC956221
genomic: ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAGgtagggattt ... tccactctagGTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
EST: CTTCNGNCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAG GTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTCEST: gi|208373621|gb|DC952446.1|DC952446
genomic: CTTC-GGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAGgtagggattt ... tccactctagGTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
EST: ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAG GTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTCEST: gi|208370482|gb|DC952185.1|DC952185
genomic: ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAGgtagggattt ... tccactctagGTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
EST: ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAG GTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTCEST: gi|208392926|gb|DC928612.1|DC928612
genomic: ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAGgtagggattt ... tccactctagGTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
EST: ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAG GTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTCEST: gi|67727277|gb|BJ977536.1|BJ977536
genomic: ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAGgtagggattt ... tccactctagGTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
EST: ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAG GTAANCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
genomic: ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAGgtagggattt ... tccactctagGTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
gctgactctcgcttggtttgggctacataaattgtcttctacttctccactctagGTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTCTCAGCTTCTACATACTCATATATCTCACTCTTGAAGTATTTTGCCCCTA
tgctgac putative branch site (score: 2)
ttgtcttctacttctc putative PPT
tacataaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagggattttatccactaagcacaggctgcaaatggtcctggtttcgctctgaatatgctttcatttctcggcaccattttcttgggtattgcttgaccttgtgtacaaactcgaatctgctgactctcgcttggtttgggctacataaattgtcttctacttctccactctagGTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTCTCAGCTTCTACATACTCATATATCTCACTCTTGAAGTATTTTGCCCCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG