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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTCTCAACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCCCGAAGgtaagtgcctgaacaatgcaacgtgaacacttcgtttagcgaaggtttagacatgtttatatgtaaagtaaaataatgctgtaaggagagagataaccag...

Basic information

species Physcomitrella patens
transcript PP1S99_59V6.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208362407|gb|DC930968.1|DC930968
EST:     AACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCCCGAAG                         ACTCCCCAACGGAGGGCTATTGGAGATAGCGAAAGTCTATCCTCTGGATGC
genomic: AACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCCCGAAGgtaagtgcct ... ttttttctagACTCCCCAACGGAGGGCTATTGGAGATAGCGAAAGTCTATCCTCTGGATGC
EST: gi|100376551|gb|BY986221.1|BY986221
EST:     AACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCCCGAAG                         ACTCCCCAACGGAGGGCTATTGGAGATAGCGAAAGTCTATCCTCTGGATGC
genomic: AACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCCCGAAGgtaagtgcct ... ttttttctagACTCCCCAACGGAGGGCTATTGGAGATAGCGAAAGTCTATCCTCTGGATGC
EST: gi|208388729|gb|DC941528.1|DC941528
EST:     AACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCCCGAAG                         ACTCCCCAACGGAGGGCTATTGGAGATAGCGAAAGTCTATCCTCTGGATGC
genomic: AACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCCCGAAGgtaagtgcct ... ttttttctagACTCCCCAACGGAGGGCTATTGGAGATAGCGAAAGTCTATCCTCTGGATGC
EST: gi|208355241|gb|DC929744.1|DC929744
EST:     AACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCCCGAAG                         ACTCCCCAACGGAGGGCTATTGGAGATAGCGAAAGTCTATCCTCTGGATGC
genomic: AACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCCCGAAGgtaagtgcct ... ttttttctagACTCCCCAACGGAGGGCTATTGGAGATAGCGAAAGTCTATCCTCTGGATGC
EST: gi|208373717|gb|DC936544.1|DC936544
EST:     AACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCCCGAAG                         ACTCCCCAACGGAGGGCTATTGGAGATAGCGAAAGTCTATCCTCTGGATGC
genomic: AACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCCCGAAGgtaagtgcct ... ttttttctagACTCCCCAACGGAGGGCTATTGGAGATAGCGAAAGTCTATCCTCTGGATGC
EST: gi|208362869|gb|DC950819.1|DC950819
EST:     ACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTTCCCGAAG                         ACTCCCCAACGGAGGGCTATTGGAGATAGCGAAAGTCTATCCTCTGGATG
genomic: ACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAG-TCCCGAAGgtaagtgcct ... ttttttctagACTCCCCAACGGAGGGCTATTGGAGATAGCGAAAGTCTATCCTCTGGATG
EST: gi|208372849|gb|DC956250.1|DC956250
EST:     AACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCCCGAAG                         ACTCCCCCAACGGAGGGCTATTGGAGATAGCGAAAGTCTATCCTCTGGATG
genomic: AACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCCCGAAGgtaagtgcct ... ttttttctagACT-CCCCAACGGAGGGCTATTGGAGATAGCGAAAGTCTATCCTCTGGATG
EST: gi|208389559|gb|DC929456.1|DC929456
EST:     AACATCTTTGAGAGCAGTTTGAGGANAGGCAAGTTCNACGAGTCCCGAAG                         ACTCCCCAACGGAGGGCTATTGAAGATAGCGAAAGTCTATCCTCTGGATGC
genomic: AACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCCCGAAGgtaagtgcct ... ttttttctagACTCCCCAACGGAGGGCTATTGGAGATAGCGAAAGTCTATCCTCTGGATGC
EST: gi|100424723|gb|BY976783.1|BY976783
EST:     AACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCCCGAAG                         ACTCCCCAACGGAGGGCTATTGGAGATAGCGAAAGTCTATCCTCTGGATGC
genomic: AACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCCCGAAGgtaagtgcct ... ttttttctagACTCCCCAACGGAGGGCTATTGGAGATAGCGAAAGTCTATCCTCTGGATGC
EST: gi|208354826|gb|DC934358.1|DC934358
EST:     AACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCCCGAAG                         ACTCCCCAACGGANGGCTATTGGAGATAGCGAAAGTCTATCCTCTGGATGC
genomic: AACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCCCGAAGgtaagtgcct ... ttttttctagACTCCCCAACGGAGGGCTATTGGAGATAGCGAAAGTCTATCCTCTGGATGC
EST: gi|100452492|gb|CJ975298.1|CJ975298
EST:     AACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACNAGTCCCGAAG                         ACTCCCCAACGGANGGCTATTGGAGATAGCGAAAGTCTATCCTCTGGATGC
genomic: AACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCCCGAAGgtaagtgcct ... ttttttctagACTCCCCAACGGAGGGCTATTGGAGATAGCGAAAGTCTATCCTCTGGATGC
EST: gi|208389923|gb|DC937754.1|DC937754
EST:     AACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCCCGAAG                         ACTCCCCAACGGAGGGCTATTGGAGATAGCGAAAGTCTATCCTCTGGATGC
genomic: AACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCCCGAAGgtaagtgcct ... ttttttctagACTCCCCAACGGAGGGCTATTGGAGATAGCGAAAGTCTATCCTCTGGATGC
EST: gi|100441629|gb|BY962720.1|BY962720
EST:     AACATCTTTGAGAGCAGTTTGAGGAGAGGCA-GTTCGACGAGTCCCGAAG                         ACTCCCCA-CGGAGGGCTATTGGGAGATAGCGAA-GTCTATCCTCTGGATG
genomic: AACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCCCGAAGgtaagtgcct ... ttttttctagACTCCCCAACGGAGGGCTATTGG-AGATAGCGAAAGTCTATCCTCTGGATG
EST: gi|208365068|gb|DC943377.1|DC943377
EST:     AACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCCCGAAG                         ACTCCCCAACGGAGGGCTATTGGAGATAGCGAAAGTCTATCCTCTGGATGC
genomic: AACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCCCGAAGgtaagtgcct ... ttttttctagACTCCCCAACGGAGGGCTATTGGAGATAGCGAAAGTCTATCCTCTGGATGC
EST: gi|208369066|gb|DC931637.1|DC931637
EST:     AACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCCCGAAG                         ACTCCCCAACGGAGGGCTATTGGAGATANCGAAAGTCTATCCTCTGGATGC
genomic: AACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCCCGAAGgtaagtgcct ... ttttttctagACTCCCCAACGGAGGGCTATTGGAGATAGCGAAAGTCTATCCTCTGGATGC
EST: gi|208380442|gb|DC914866.1|DC914866
EST:     ACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCCCGAANG                         -CTCCCCAACGGANGGCTATTGGAGATAGCGAAAGTCTATCCTCTGGATG
genomic: ACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCCCGAA-Ggtaagtgcct ... ttttttctagACTCCCCAACGGAGGGCTATTGGAGATAGCGAAAGTCTATCCTCTGGATG
EST: gi|208390204|gb|DC941983.1|DC941983
EST:     AACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCCCGAAG                         ACTCCCCAACGGAGGGCTATTGGAGATAGCGAAAGTCTATCCTCTGGATGC
genomic: AACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCCCGAAGgtaagtgcct ... ttttttctagACTCCCCAACGGAGGGCTATTGGAGATAGCGAAAGTCTATCCTCTGGATGC
EST: gi|208363068|gb|DC957995.1|DC957995
EST:     AACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCCCGAAG                         ACTCCCCAACGGAGGGCTATTGGAGATAGCGAAAGTCTATCCTCTGGATGC
genomic: AACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCCCGAAGgtaagtgcct ... ttttttctagACTCCCCAACGGAGGGCTATTGGAGATAGCGAAAGTCTATCCTCTGGATGC
EST: gi|67719180|gb|BJ969439.1|BJ969439
EST:     AACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCCCGAAG                         ACTCCCCAACGGAGGGCTATTGGAGATAGCGAAAGTCTATCCTCTGGATGC
genomic: AACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCCCGAAGgtaagtgcct ... ttttttctagACTCCCCAACGGAGGGCTATTGGAGATAGCGAAAGTCTATCCTCTGGATGC
EST: gi|162157331|gb|FC333459.1|FC333459
EST:     AACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCCCGAAG                         TCTCCCCAACGGAGGGCTATTGGAGATAGCGAAAGTCTATCCTCTGGATGC
genomic: AACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCCCGAAGgtaagtgcct ... ttttttctagACTCCCCAACGGAGGGCTATTGGAGATAGCGAAAGTCTATCCTCTGGATGC
EST: gi|208390690|gb|DC937846.1|DC937846
EST:     AACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCCCGAAG                         ACTCCCCAACGGAGGGCTATTGGAGATAGCGAAAGTCTATCCTCTGGATGC
genomic: AACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCCCGAAGgtaagtgcct ... ttttttctagACTCCCCAACGGAGGGCTATTGGAGATAGCGAAAGTCTATCCTCTGGATGC
EST: gi|208361941|gb|DC943233.1|DC943233
EST:     AACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCCCGAAG                         ACTCCCCAACGGAGGGCTATTGGAGATAGCGAAAGTCTATCCTCTGGATGC
genomic: AACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCCCGAAGgtaagtgcct ... ttttttctagACTCCCCAACGGAGGGCTATTGGAGATAGCGAAAGTCTATCCTCTGGATGC
EST: gi|208362182|gb|DC935624.1|DC935624
EST:     AACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCCCGAAG                         ACTCCCCAACGGAGGGCTATTGGAGATAGCGAAAGTCTATCCTCTGGATGC
genomic: AACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCCCGAAGgtaagtgcct ... ttttttctagACTCCCCAACGGAGGGCTATTGGAGATAGCGAAAGTCTATCCTCTGGATGC
EST: gi|208392588|gb|DC938553.1|DC938553
EST:     AACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCCCGAAG                         ACTCCCCAACGGAGGGCTATTGGAGATAGCGAAAGTCTATCCTCTGGATGC
genomic: AACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCCCGAAGgtaagtgcct ... ttttttctagACTCCCCAACGGAGGGCTATTGGAGATAGCGAAAGTCTATCCTCTGGATGC
EST: gi|208358028|gb|DC938871.1|DC938871
EST:     AACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCCCGAAG                         ACTCCCCAACGGAGGGCTATTGGAGATAGCGAAAGTCTATCCTCTGGATGC
genomic: AACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCCCGAAGgtaagtgcct ... ttttttctagACTCCCCAACGGAGGGCTATTGGAGATAGCGAAAGTCTATCCTCTGGATGC
EST: gi|208363548|gb|DC939753.1|DC939753
EST:     AACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCCCGAAG                         ACTCCCCAACGGAGGGCTATTGGAGATAGCGAAAGTCTATCCTCTGGATGC
genomic: AACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCCCGAAGgtaagtgcct ... ttttttctagACTCCCCAACGGAGGGCTATTGGAGATAGCGAAAGTCTATCCTCTGGATGC
EST: gi|208390983|gb|DC929302.1|DC929302
EST:     AACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCCCGAAG                         ACTCCCCAACGGAGGGCTATTGGAGATAGCGAAAGTCTATCCTCTGGATGC
genomic: AACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCCCGAAGgtaagtgcct ... ttttttctagACTCCCCAACGGAGGGCTATTGGAGATAGCGAAAGTCTATCCTCTGGATGC
EST: gi|208386618|gb|DC932680.1|DC932680
EST:     AACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCCCGAAG                         ACTCCCCAACGGAGGGCTATTGGAGATAGCGAAAGTCTATCCTCTGGATGC
genomic: AACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCCCGAAGgtaagtgcct ... ttttttctagACTCCCCAACGGAGGGCTATTGGAGATAGCGAAAGTCTATCCTCTGGATGC
EST: gi|208361752|gb|DC934992.1|DC934992
EST:     AACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCCCGAAG                         ACTCCCCAACGGAGGGCTATTGGAGATGGCGAAAGTCTATCCTCTGGATGC
genomic: AACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCCCGAAGgtaagtgcct ... ttttttctagACTCCCCAACGGAGGGCTATTGGAGATAGCGAAAGTCTATCCTCTGGATGC
EST: gi|208360154|gb|DC939179.1|DC939179
EST:     AACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCCCGAAG                         ACTCCCCAACGGAGGGCTATTGGAGATAGCGAAAGTCTATCCTCTAGATGC
genomic: AACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCCCGAAGgtaagtgcct ... ttttttctagACTCCCCAACGGAGGGCTATTGGAGATAGCGAAAGTCTATCCTCTGGATGC
EST: gi|208377951|gb|DC906908.1|DC906908
EST:     AACATCTTTGANAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCCCGAAG                         ACTCCCCAACGGAGGGCTATTGGAGATAGCGAAAGTCNATCCTCTGGATGC
genomic: AACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCCCGAAGgtaagtgcct ... ttttttctagACTCCCCAACGGAGGGCTATTGGAGATAGCGAAAGTCTATCCTCTGGATGC
EST: gi|208365560|gb|DC935713.1|DC935713
EST:     AACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCCCGAAG                         ACTCCCCAACGGAGGGCTATTGGAGATAGCGAAAGTCTATCCTCTGGATGC
genomic: AACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCCCGAAGgtaagtgcct ... ttttttctagACTCCCCAACGGAGGGCTATTGGAGATAGCGAAAGTCTATCCTCTGGATGC
EST: gi|162280155|gb|FC455964.1|FC455964
EST:     GTTTGAGGAGAGGCAAGTTCGACGAGTCCCGAAG                         ACTCCCCAACGGAGGGCTATTGGAGATAGCGAAAGTCTATCCTCTGGATGC
genomic: GTTTGAGGAGAGGCAAGTTCGACGAGTCCCGAAGgtaagtgcct ... ttttttctagACTCCCCAACGGAGGGCTATTGGAGATAGCGAAAGTCTATCCTCTGGATGC
EST: gi|208383608|gb|DC906999.1|DC906999
EST:     AACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCCCGAAG                         ACTCCCCAACGGAGGGCTATTGGAGATAGCGAAAGTCTATCCTCTGGATGC
genomic: AACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCCCGAAGgtaagtgcct ... ttttttctagACTCCCCAACGGAGGGCTATTGGAGATAGCGAAAGTCTATCCTCTGGATGC
EST: gi|208362624|gb|DC939520.1|DC939520
EST:     AACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCCCGAAG                         ACTCCCCAACGGAGGGCTATTGGAGATAGCGAAAGTCTATCCTCTGGATGC
genomic: AACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCCCGAAGgtaagtgcct ... ttttttctagACTCCCCAACGGAGGGCTATTGGAGATAGCGAAAGTCTATCCTCTGGATGC
EST: gi|67709647|gb|BJ965463.1|BJ965463
EST:     AACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCCCGAAG                         ACTCCCCAACGGAGGGCTATTGG
genomic: AACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCCCGAAGgtaagtgcct ... ttttttctagACTCCCCAACGGAGGGCTATTGG
EST: gi|208364518|gb|DC930908.1|DC930908
EST:     AACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCCCGAAG                         ACTCCCCAACGGAGGGCTATTGGAGATAGCGAAAGTCTATCCTCTGGATGC
genomic: AACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCCCGAAGgtaagtgcct ... ttttttctagACTCCCCAACGGAGGGCTATTGGAGATAGCGAAAGTCTATCCTCTGGATGC
EST: gi|208357946|gb|DC943058.1|DC943058
EST:     AACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCCCGAAG                         ACTCCCCAACGGAGGGCTATTGGAGATAGCGAAAGTCTATCCTCTGGATGC
genomic: AACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCCCGAAGgtaagtgcct ... ttttttctagACTCCCCAACGGAGGGCTATTGGAGATAGCGAAAGTCTATCCTCTGGATGC
EST: gi|100366483|gb|BY985157.1|BY985157
EST:     AACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCCCGAAG                         ACTCCCCAACGGAGGGCTATTGGAGATAGCGAAAGTCTATCCTCTGGATGC
genomic: AACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCCCGAAGgtaagtgcct ... ttttttctagACTCCCCAACGGAGGGCTATTGGAGATAGCGAAAGTCTATCCTCTGGATGC
EST: gi|100390412|gb|BY952820.1|BY952820
EST:     AACATCTTTGAGAGCAGTTTGAGGGGAGGCAAGTTCGACGAGTNCCGAAG                         ACTCCCCAACGGAGGGCTATTGGAGATAGCGAAAGTCTATCCTCTGGATGC
genomic: AACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCCCGAAGgtaagtgcct ... ttttttctagACTCCCCAACGGAGGGCTATTGGAGATAGCGAAAGTCTATCCTCTGGATGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCTCTCAACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCCCGAAGgtaagtgcctgaacaatgcaacgtgaacacttcgtttagcgaaggtttagacatgtttatatgtaaagtaaaataatgctgtaaggagagagataaccag

- - - - - - - - AGAGCA
- - - - - - - -  GAGCAG
- - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - -  AGGAGA
- - - - - - - - - - - - - -  GAGAGG