1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtgtgtggcaatggcaatggtggagacggagtgaaacatggattccgtttttattatttattatttattattttaattggaatagtgtctaaacagttctgtgtgcttatttatatcgtttggagttttttagGGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGGCTATTGCCAAAGCCCTGTCAGCAGCTGGAGCTGAAATCCTTGTCGGAAC
species | Physcomitrella patens |
transcript | PP1S99_59V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAG GGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGGEST: gi|100376551|gb|BY986221.1|BY986221
genomic: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAGgtgtgtggca ... agttttttagGGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
EST: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAG GGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGGEST: gi|208388729|gb|DC941528.1|DC941528
genomic: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAGgtgtgtggca ... agttttttagGGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
EST: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAG GGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGGEST: gi|208355241|gb|DC929744.1|DC929744
genomic: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAGgtgtgtggca ... agttttttagGGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
EST: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAG GGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGGEST: gi|18373999|gb|BJ205577.1|BJ205577
genomic: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAGgtgtgtggca ... agttttttagGGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
EST: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAG GGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGGEST: gi|208373717|gb|DC936544.1|DC936544
genomic: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAGgtgtgtggca ... agttttttagGGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
EST: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAG GGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGGEST: gi|208389559|gb|DC929456.1|DC929456
genomic: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAGgtgtgtggca ... agttttttagGGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
EST: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCNAG GGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGGEST: gi|100424723|gb|BY976783.1|BY976783
genomic: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAGgtgtgtggca ... agttttttagGGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
EST: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAG GGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGGEST: gi|208354826|gb|DC934358.1|DC934358
genomic: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAGgtgtgtggca ... agttttttagGGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
EST: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAG GGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGGEST: gi|100452492|gb|CJ975298.1|CJ975298
genomic: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAGgtgtgtggca ... agttttttagGGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
EST: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAG GGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGGEST: gi|208389923|gb|DC937754.1|DC937754
genomic: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAGgtgtgtggca ... agttttttagGGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
EST: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAG GGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGGEST: gi|100441629|gb|BY962720.1|BY962720
genomic: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAGgtgtgtggca ... agttttttagGGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
EST: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAG GGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGGEST: gi|208365068|gb|DC943377.1|DC943377
genomic: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAGgtgtgtggca ... agttttttagGGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
EST: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAG GGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGGEST: gi|208369066|gb|DC931637.1|DC931637
genomic: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAGgtgtgtggca ... agttttttagGGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
EST: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAG GGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGGEST: gi|208380442|gb|DC914866.1|DC914866
genomic: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAGgtgtgtggca ... agttttttagGGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
EST: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAG GGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGGEST: gi|208390204|gb|DC941983.1|DC941983
genomic: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAGgtgtgtggca ... agttttttagGGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
EST: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAG GGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGGEST: gi|67719180|gb|BJ969439.1|BJ969439
genomic: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAGgtgtgtggca ... agttttttagGGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
EST: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAG GGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGGEST: gi|162157331|gb|FC333459.1|FC333459
genomic: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAGgtgtgtggca ... agttttttagGGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
EST: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAG GGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGGEST: gi|208390690|gb|DC937846.1|DC937846
genomic: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAGgtgtgtggca ... agttttttagGGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
EST: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAG GGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGGEST: gi|208361941|gb|DC943233.1|DC943233
genomic: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAGgtgtgtggca ... agttttttagGGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
EST: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAG GGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGGEST: gi|208362182|gb|DC935624.1|DC935624
genomic: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAGgtgtgtggca ... agttttttagGGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
EST: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAG GGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGGEST: gi|208392588|gb|DC938553.1|DC938553
genomic: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAGgtgtgtggca ... agttttttagGGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
EST: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAG GGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGGEST: gi|208358028|gb|DC938871.1|DC938871
genomic: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAGgtgtgtggca ... agttttttagGGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
EST: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAG GGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGGEST: gi|208363548|gb|DC939753.1|DC939753
genomic: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAGgtgtgtggca ... agttttttagGGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
EST: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAG GGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGGEST: gi|208390983|gb|DC929302.1|DC929302
genomic: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAGgtgtgtggca ... agttttttagGGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
EST: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAG GGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGGEST: gi|208386618|gb|DC932680.1|DC932680
genomic: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAGgtgtgtggca ... agttttttagGGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
EST: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAG GGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGGEST: gi|208361752|gb|DC934992.1|DC934992
genomic: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAGgtgtgtggca ... agttttttagGGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
EST: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAG GGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGGEST: gi|208360154|gb|DC939179.1|DC939179
genomic: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAGgtgtgtggca ... agttttttagGGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
EST: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAG GGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGGEST: gi|208377951|gb|DC906908.1|DC906908
genomic: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAGgtgtgtggca ... agttttttagGGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
EST: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAG GGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGGEST: gi|208365560|gb|DC935713.1|DC935713
genomic: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAGgtgtgtggca ... agttttttagGGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
EST: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAG GGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGGEST: gi|208383608|gb|DC906999.1|DC906999
genomic: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAGgtgtgtggca ... agttttttagGGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
EST: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAG GGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGGEST: gi|208362624|gb|DC939520.1|DC939520
genomic: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAGgtgtgtggca ... agttttttagGGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
EST: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCNAG GGAAAAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGGEST: gi|67709647|gb|BJ965463.1|BJ965463
genomic: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAGgtgtgtggca ... agttttttagGGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
EST: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGTTCTGCGAG GGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGGEST: gi|208364518|gb|DC930908.1|DC930908
genomic: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAGgtgtgtggca ... agttttttagGGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
EST: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAG GGAAGAGAGCGTTCATTGCTGGTGTGNCTGATGATCAAGGTTTTGGCTGGGEST: gi|208357946|gb|DC943058.1|DC943058
genomic: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAGgtgtgtggca ... agttttttagGGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
EST: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAG GGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGGEST: gi|100366483|gb|BY985157.1|BY985157
genomic: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAGgtgtgtggca ... agttttttagGGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
EST: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAG GGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGGEST: gi|100390412|gb|BY952820.1|BY952820
genomic: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAGgtgtgtggca ... agttttttagGGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
EST: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAG GGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
genomic: TTCCAACGGGGGTGCATTGCCGCCCAGCGGTCTTCCCATTGATCTGCGAGgtgtgtggca ... agttttttagGGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGG
ggaatagtgtctaaacagttctgtgtgcttatttatatcgtttggagttttttagGGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGGCTATTGCCAAAGCCCTGTCAGCAGCTGGAGCTGAAATCCTTGTCGGAAC
gtctaaa putative branch site (score: 3)
tttttt putative PPT
ttatttatatcgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgtggcaatggcaatggtggagacggagtgaaacatggattccgtttttattatttattatttattattttaattggaatagtgtctaaacagttctgtgtgcttatttatatcgtttggagttttttagGGAAGAGAGCGTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGGCTATTGCCAAAGCCCTGTCAGCAGCTGGAGCTGAAATCCTTGTCGGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA