1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' |
gtatggaatgcattgttgagaaagtcctaaacctgattcacatgcacatgagtaccactgattttgcatatcgtattggaattcaacaagttgtattggttctttcttgcctatttttggtttctatttgcttcttctttttgacgactggcttgaaacatgtgatgtatgctggtgtggcagATCGACGGTTTACCCCCTAGTGATTGCCGCGCACCCTGCGGAGCCAAACCAGTTTGCATTGGGCTTGAGTGATGGAGGCGTTCAAGTAATAGAGCCACTA
species | Physcomitrella patens |
transcript | PP1S99_260V6.1 |
intron # | 24 |
splice site | 3' |
intron type | U2 |
EST: CCACGATGCCGACTTGCCCCAACTGTGCACGTACCTTCGGGAGTAAGCGG ATCGACGGTTTACCCCCTAGTGATTGCCGCGCACCCTGCGGAGCCAAACCAEST: gi|162243462|gb|FC425158.1|FC425158
genomic: CCACGATGCCGACTTGCCCCAACTGTGCACGTACCTTCGGGAGTAAGCGGgtatggaatg ... ggtgtggcagATCGACGGTTTACCCCCTAGTGATTGCCGCGCACCCTGCGGAGCCAAACCA
EST: CCACGATGCCGACTTGCCCCAACTGTGCACGTACCTTCGGGAGTAAGCGG ATCGACGGTTTACCCCCTAGTGATTGCCGCGCACCCTGCGGAGCCAAACCAEST: gi|162169317|gb|FC345479.1|FC345479
genomic: CCACGATGCCGACTTGCCCCAACTGTGCACGTACCTTCGGGAGTAAGCGGgtatggaatg ... ggtgtggcagATCGACGGTTTACCCCCTAGTGATTGCCGCGCACCCTGCGGAGCCAAACCA
EST: CCACGATGCCGACTTGCCCCAACTGTGCACGTACCTTCGGGAGTAAGCGG ATCGACGGTTTACCCCCTAGTGATTGCCGCGCACCCTGCGGAGCCAAACCAEST: gi|162177665|gb|FC353251.1|FC353251
genomic: CCACGATGCCGACTTGCCCCAACTGTGCACGTACCTTCGGGAGTAAGCGGgtatggaatg ... ggtgtggcagATCGACGGTTTACCCCCTAGTGATTGCCGCGCACCCTGCGGAGCCAAACCA
EST: CCACGATGCCGACTTGCCCCAACTGTGCACGTACCTTCGGGAGTAAGCGG ATCGACGGTTTACCCCCTAGTGATTGCCGCGCACCCTGCGGAGCCAAACCAEST: gi|162177513|gb|FC353774.1|FC353774
genomic: CCACGATGCCGACTTGCCCCAACTGTGCACGTACCTTCGGGAGTAAGCGGgtatggaatg ... ggtgtggcagATCGACGGTTTACCCCCTAGTGATTGCCGCGCACCCTGCGGAGCCAAACCA
EST: CCACGATGCCGACTTGCCCCAACTGTGCACGTACCTTCGGGAGTAAGCGG ATCGACGGTTTACCCCCTAGTGATTGCCGCGCACCCTGCGGAGCCAAACCAEST: gi|162279737|gb|FC455645.1|FC455645
genomic: CCACGATGCCGACTTGCCCCAACTGTGCACGTACCTTCGGGAGTAAGCGGgtatggaatg ... ggtgtggcagATCGACGGTTTACCCCCTAGTGATTGCCGCGCACCCTGCGGAGCCAAACCA
EST: CCACGATGCCGACTTGCCCCAACTGTGCACGTACCTTCGGGAGTAAGCGG ATCGACGGTTTACCCCCTAGTGATTGCCGCGCACCCTGCGGAGCCAAACCAEST: gi|162279738|gb|FC455646.1|FC455646
genomic: CCACGATGCCGACTTGCCCCAACTGTGCACGTACCTTCGGGAGTAAGCGGgtatggaatg ... ggtgtggcagATCGACGGTTTACCCCCTAGTGATTGCCGCGCACCCTGCGGAGCCAAACCA
EST: CCACGATGCCGACTTGCCCCAACTGTGCACGTACCTTCGGGAGTAAGCGG ATCGACGGTTTACCCCCTAGTGATTGCCGCGCACCCTGCGGAGCCAAACCA
genomic: CCACGATGCCGACTTGCCCCAACTGTGCACGTACCTTCGGGAGTAAGCGGgtatggaatg ... ggtgtggcagATCGACGGTTTACCCCCTAGTGATTGCCGCGCACCCTGCGGAGCCAAACCA
tgcttcttctttttgacgactggcttgaaacatgtgatgtatgctggtgtggcagATCGACGGTTTACCCCCTAGTGATTGCCGCGCACCCTGCGGAGCCAAACCAGTTTGCATTGGGCTTGAGTGATGGAGGCGTTCAAGTAATAGAGCCACTA
ttttgac putative branch site (score: 2)
ttcttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatggaatgcattgttgagaaagtcctaaacctgattcacatgcacatgagtaccactgattttgcatatcgtattggaattcaacaagttgtattggttctttcttgcctatttttggtttctatttgcttcttctttttgacgactggcttgaaacatgtgatgtatgctggtgtggcagATCGACGGTTTACCCCCTAGTGATTGCCGCGCACCCTGCGGAGCCAAACCAGTTTGCATTGGGCTTGAGTGATGGAGGCGTTCAAGTAATAGAGCCACTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG