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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGAAAAGCAAGTTGAAGGGTCATCAAAAGAGAATTACTGGCTTAGCTTTCTCTAACACTCTCAATGTTCTTGTATCATCCGGAGCGGATGCTCAGgtacatacttgttcatcaattgcatacagctgtctatttgcactttgatccagctattttcgtgtgaaactcgtgctctggtcccgggatggacccgtccagatctttatctgacgcatttcttctttccag

Basic information

species Physcomitrella patens
transcript PP1S99_260V6.1
intron # 22
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S99_260V6.1 (Physcomitrella patens), 5'ss of exon 22
lower sequence: GLYMA03G39290.1 (Glycine max), 5'ss of exon 23
GTGAAAAGCAAGTTGAAGGGTCATCAAAAGAGAATTACTGGCTTAGCTTTCTCTAACACTCTCAATGTTCTTGTATCATCCGGAGCGGATGCTCAGgtacatacttgttcatcaattgcatacagctgtctatttgcactttgatccagctattttcgtgtgaaactcgtgctctggtcccgggatggacccgtccagatctttatctgacgcatttcttctttccag
||||||   || |||||||||||||||||| |||||||||| ||||| || || | |  ||| ||  | || || ||||| || || |||||||| |||      |||   | || ||       ||   |   | ||   |||| | |  |   || |    ||    | || | |    | |||   | |    || | | | |||   | ||             
GTGAAATCTAAATTGAAGGGTCATCAAAAGCGAATTACTGGTTTAGCCTTTTCAACCTGTCTTAACATCCTGGTTTCATCTGGTGCTGATGCTCAAgta------tgtcttttaactgtt-----ctcctttcattcagggtgattcggaaaacctcatacataataatttcttttg----gagat---ctctgttagttatctgtctt-tggat-------------

upper sequence: PP1S99_260V6.1 (Physcomitrella patens), 5'ss of exon 22
lower sequence: GLYMA19G41840.1 (Glycine max), 5'ss of exon 22
GTGAAAAGCAAGTTGAAGGGTCATCAAAAGAGAATTACTGGCTTAGCTTTCTCTAACACTCTCAATGTTCTTGTATCATCCGGAGCGGATGCTCAGgtacatacttgttcatcaattgcatacagctgtctatttgcactttgatccagctattttcgtgtgaaactcgtgctctggtcccgggatggacccgtccagatctttatctgacgcatttcttctttccag
||||||   || |||||||||||||||||| |||||||||| ||||| || || | |  ||| ||  | || || ||||| || || |||||||| |||  | ||| |       || | | ||  |   ||  |  |   ||||   |  |   | |||   ||    |  | || |   | |||   | |    || | | | ||                     
GTGAAATCTAAATTGAAGGGTCATCAAAAGCGAATTACTGGTTTAGCCTTTTCAACCTGTCTTAACATCCTGGTTTCATCTGGTGCTGATGCTCAAgtatgt-cttttaagcgtgttcctttcattt---tagatttagggtgatttggaaaaccttgtgcataa----taatttgttttggagat---ctctgttagttatctttc---------------------

upper sequence: PP1S99_260V6.1 (Physcomitrella patens), 5'ss of exon 22
lower sequence: Vv09s0002g07020.t01 (Vitis vinifera), 5'ss of exon 22
GTGAAAAGCAAGTTGAAGGGTCATCAAAAGAGAATTACTGGCTTAGCTTTCTCTAACACTCTCAATGTTCTTGTATCATCCGGAGCGGATGCTCAGgtacatacttgttcatcaattgcatacagctgtctatttgcactttgatccagctattttcgtgtgaaactcgtgctctgg-tcccgggatggacccgtccagatctttatctgacgcatttcttctttccag
|| ||||||||| | || |||||||| |||| | | |||||| | |||||||||||   ||| |||||| | |||||||| ||||| ||||||||||||  |     |  |||| |  |   |  | | | |     | ||  |   |  |   ||  |||||  |   | || |   |      ||| |  |   |||||                            
GTCAAAAGCAAGCTCAAAGGTCATCAGAAGAAAGTAACTGGCCTTGCTTTCTCTAATGTTCTAAATGTTTTAGTATCATCGGGAGCTGATGCTCAGgtatgt-----tgtatcattctctcccccccgac-acacataattgcagatatatgaatttatgtgacgcaaatactttaaatagataaatgaaatctgtcagatg---------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162243462|gb|FC425158.1|FC425158
EST:     CTTTCTCTAACACTCTCAATGTTCTTGTATCATCCGGAGCGGATGCTCAG                         TTGTGTATGTGGGGAACTGATGGCTGGGAGAAAAAGAAGTCGAAGTTTGTG
genomic: CTTTCTCTAACACTCTCAATGTTCTTGTATCATCCGGAGCGGATGCTCAGgtacatactt ... ttctttccagTTGTGTATGTGGGGAACTGATGGCTGGGAGAAAAAGAAGTCGAAGTTTGTG
EST: gi|162169317|gb|FC345479.1|FC345479
EST:     CTTTCTCTAACACTCTCAATGTTCTTGTATCATCCGGAGCGGATGCTCAG                         TTGTGTATGTGGGGAACTGATGGCTGGGAGAAAAAGAAGTCGAAGTTTGTG
genomic: CTTTCTCTAACACTCTCAATGTTCTTGTATCATCCGGAGCGGATGCTCAGgtacatactt ... ttctttccagTTGTGTATGTGGGGAACTGATGGCTGGGAGAAAAAGAAGTCGAAGTTTGTG
EST: gi|162177513|gb|FC353774.1|FC353774
EST:     AACACTCTCAATGTTCTTGTATCATCCGGAGCGGATGCTCAG                         TTGTGTATGTGGGGAACTGATGGCTGGGAGAAAAAGAAGTCGAAGTTTGTG
genomic: AACACTCTCAATGTTCTTGTATCATCCGGAGCGGATGCTCAGgtacatactt ... ttctttccagTTGTGTATGTGGGGAACTGATGGCTGGGAGAAAAAGAAGTCGAAGTTTGTG
EST: gi|162279738|gb|FC455646.1|FC455646
EST:     CTTTCTCTAACACTCTCAATGTTCTTGTATCATCCGGAGCGGATGCTCAG                         TTGTGTATGTGGGGAACTGATGGCTGGGAGAAAAAGAAGTCGAAGTTTGTG
genomic: CTTTCTCTAACACTCTCAATGTTCTTGTATCATCCGGAGCGGATGCTCAGgtacatactt ... ttctttccagTTGTGTATGTGGGGAACTGATGGCTGGGAGAAAAAGAAGTCGAAGTTTGTG