1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaattggattccgtagagaccctcaattatccttctgcattgatgtctagaacaaattaaccccagttcaggttttgaaaattgcggtgtatgtgtttgctaacccgactgaaattaggattgtcgtggggtatttctgtgacagAGGGAATGCTTCTTGTTGAGCTGAATCGCGTTCTAAGACCAGGGGGCTACTTTCTGTGGTCGGCAACCCCTGTGTACTGGAAGGACGAGGAGAACGTTCA
species | Physcomitrella patens |
transcript | PP1S99_226V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTTCGATGTTGTGCACTGCGCTAGATGTCGTGTTCCATGGCATAGTGACG AGGGAATGCTTCTTGTTGAGCTGAATCGCGTTCTAAGACCAGGGGGCTACTEST: gi|162176974|gb|FC353651.1|FC353651
genomic: TTTCGATGTTGTGCACTGCGCTAGATGTCGTGTTCCATGGCATAGTGACGgtaattggat ... tctgtgacagAGGGAATGCTTCTTGTTGAGCTGAATCGCGTTCTAAGACCAGGGGGCTACT
EST: TTTCGATGTTGTGCACTGCGCTAGATGTCGTGTTCCATGGCATAGTGACG AGGGAATGCTTCTTGTTGAGCTGAATCGCGTTCTAAGACCAGGGGGCTACTEST: gi|162159293|gb|FC334613.1|FC334613
genomic: TTTCGATGTTGTGCACTGCGCTAGATGTCGTGTTCCATGGCATAGTGACGgtaattggat ... tctgtgacagAGGGAATGCTTCTTGTTGAGCTGAATCGCGTTCTAAGACCAGGGGGCTACT
EST: TTTCGATGTTGTGCACTGCGCTAGATGTCGTGTTCCATGGCATAGTGACG AGGGAATGCTTCTTGTTGAGCTGAATCGCGTTCTAAGACCAGGGGGCTACTEST: gi|100443095|gb|BY981721.1|BY981721
genomic: TTTCGATGTTGTGCACTGCGCTAGATGTCGTGTTCCATGGCATAGTGACGgtaattggat ... tctgtgacagAGGGAATGCTTCTTGTTGAGCTGAATCGCGTTCTAAGACCAGGGGGCTACT
EST: TTTCGATGTTGTGCACTGCGCTAGATGTCGTGTTCCATGGCATAGTGACG AGGGAATGCTTCTTGTTGAGCTGAATCGCGTTCTAAGACCAGGGGGCTACT
genomic: TTTCGATGTTGTGCACTGCGCTAGATGTCGTGTTCCATGGCATAGTGACGgtaattggat ... tctgtgacagAGGGAATGCTTCTTGTTGAGCTGAATCGCGTTCTAAGACCAGGGGGCTACT
atgtgtttgctaacccgactgaaattaggattgtcgtggggtatttctgtgacagAGGGAATGCTTCTTGTTGAGCTGAATCGCGTTCTAAGACCAGGGGGCTACTTTCTGTGGTCGGCAACCCCTGTGTACTGGAAGGACGAGGAGAACGTTCA
tgctaac putative branch site (score: 1)
tatttct putative PPT
tgaaatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattggattccgtagagaccctcaattatccttctgcattgatgtctagaacaaattaaccccagttcaggttttgaaaattgcggtgtatgtgtttgctaacccgactgaaattaggattgtcgtggggtatttctgtgacagAGGGAATGCTTCTTGTTGAGCTGAATCGCGTTCTAAGACCAGGGGGCTACTTTCTGTGGTCGGCAACCCCTGTGTACTGGAAGGACGAGGAGAACGTTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA