1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgagcagctggtcactatatctgccacctttttttcgttgtttttgaacccgagttgctgcacttcttggtgggttggttggtccttgtgagctggacaattttctttatggagttggtgtcgttttcgtgtcgtttttgatttgtttagctgactgtagGTAATGTCGTCCGGTCGGGGGACGTGAGAGCTACGGGGACGAAGGAGCTTGAGATCCCATGTGCTGGCGAGGTGGATTTGCGCAGAGTAGTCGATCAAGT
species | Physcomitrella patens |
transcript | PP1S99_226V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGTGGAGCTTCGCAACTGCTTCATAGTTTAGCTGCCTGCGGACGGCGTCG GTAATGTCGTCCGGTCGGGGGACGTGAGAGCTACGGGGACGAAGGAGCTTGEST: gi|18368570|gb|BJ200655.1|BJ200655
genomic: GGTGGAGCTTCGCAACTGCTTCATAGTTTAGCTGCCTGCGGACGGCGTCGgtgagcagct ... ctgactgtagGTAATGTCGTCCGGTCGGGGGACGTGAGAGCTACGGGGACGAAGGAGCTTG
EST: GGTGGAGCTTCGCAACTGCTTCATAGTTTAGCTGCCTGCGGACGGCGTCG GTAATGTCGTCCGGTCGGGGGACGTGAGAGCTACGGGGACGAAGGAGCTTGEST: gi|18350125|gb|BJ182176.1|BJ182176
genomic: GGTGGAGCTTCGCAACTGCTTCATAGTTTAGCTGCCTGCGGACGGCGTCGgtgagcagct ... ctgactgtagGTAATGTCGTCCGGTCGGGGGACGTGAGAGCTACGGGGACGAAGGAGCTTG
EST: GGTGGAGCTTCGCAACTGCTTCATAGTTTAGCTGCCTGCGGACGGCGTCG GTAATGTCGTCCGGTCGGGGGACGTGAGAGCTACGGGGACGAAGGAGCTTGEST: gi|18371229|gb|BJ202831.1|BJ202831
genomic: GGTGGAGCTTCGCAACTGCTTCATAGTTTAGCTGCCTGCGGACGGCGTCGgtgagcagct ... ctgactgtagGTAATGTCGTCCGGTCGGGGGACGTGAGAGCTACGGGGACGAAGGAGCTTG
EST: GGTGGAGCTTCGCAACTGCTTCATAGTTTAGCTGCCTGCGGACGGCGTCG GTAATGTCGTCCGGTCGGGGGACGTGAGAGCTACGGGGACGAAGGAGCTTGEST: gi|18325614|gb|BJ157611.1|BJ157611
genomic: GGTGGAGCTTCGCAACTGCTTCATAGTTTAGCTGCCTGCGGACGGCGTCGgtgagcagct ... ctgactgtagGTAATGTCGTCCGGTCGGGGGACGTGAGAGCTACGGGGACGAAGGAGCTTG
EST: GGTGGAGCTTCGCAACTGCTTCATAGTTTAGCTGCCTGCGGACGGCGTCG GTAATGTCGTCCGGTCGGGGGACGTGAGAGCTACGGGGACGAAGGAGCTTGEST: gi|18354865|gb|BJ186924.1|BJ186924
genomic: GGTGGAGCTTCGCAACTGCTTCATAGTTTAGCTGCCTGCGGACGGCGTCGgtgagcagct ... ctgactgtagGTAATGTCGTCCGGTCGGGGGACGTGAGAGCTACGGGGACGAAGGAGCTTG
EST: GGTGGAGCTTCGCAACTGCTTCATAGTTTAGCTGCCTGCGGACGGCGTCG GTAATGTCGTCCGGTCGGGGGACGTGAGAGCTACGGGGACGAAGGAGCTTGEST: gi|18347214|gb|BJ179260.1|BJ179260
genomic: GGTGGAGCTTCGCAACTGCTTCATAGTTTAGCTGCCTGCGGACGGCGTCGgtgagcagct ... ctgactgtagGTAATGTCGTCCGGTCGGGGGACGTGAGAGCTACGGGGACGAAGGAGCTTG
EST: GGTGGAGCTTCGCAACTGCTTCATAGTTTAGCTGCCTGCGGACGGCGTCG GTAATGTCGTCCGGTCGGGGGACGTGAGAGCTACGGGGACGAAGGAGCTTGEST: gi|18368621|gb|BJ200706.1|BJ200706
genomic: GGTGGAGCTTCGCAACTGCTTCATAGTTTAGCTGCCTGCGGACGGCGTCGgtgagcagct ... ctgactgtagGTAATGTCGTCCGGTCGGGGGACGTGAGAGCTACGGGGACGAAGGAGCTTG
EST: GGTGGAGCTTCGCAACTGCTTCATAGTTTAGCTGCCTGCGGACGGCGTCG GTAATGTCGTCCGGTCGGGGGACGTGAGAGCTACGGGGACGAAGGAGCTTGEST: gi|18359825|gb|BJ191886.1|BJ191886
genomic: GGTGGAGCTTCGCAACTGCTTCATAGTTTAGCTGCCTGCGGACGGCGTCGgtgagcagct ... ctgactgtagGTAATGTCGTCCGGTCGGGGGACGTGAGAGCTACGGGGACGAAGGAGCTTG
EST: GGTGGAGCTTCGCAACTGCTTCATAGTTTAGCTGCCTGCGGACGGCGTCG GTAATGTCGTCCGGTCGGGGGACGTGAGAGCTACGGGGACGAAGGAGCTTG
genomic: GGTGGAGCTTCGCAACTGCTTCATAGTTTAGCTGCCTGCGGACGGCGTCGgtgagcagct ... ctgactgtagGTAATGTCGTCCGGTCGGGGGACGTGAGAGCTACGGGGACGAAGGAGCTTG
tttatggagttggtgtcgttttcgtgtcgtttttgatttgtttagctgactgtagGTAATGTCGTCCGGTCGGGGGACGTGAGAGCTACGGGGACGAAGGAGCTTGAGATCCCATGTGCTGGCGAGGTGGATTTGCGCAGAGTAGTCGATCAAGT
agctgac putative branch site (score: 3)
tttttgatttgttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagcagctggtcactatatctgccacctttttttcgttgtttttgaacccgagttgctgcacttcttggtgggttggttggtccttgtgagctggacaattttctttatggagttggtgtcgttttcgtgtcgtttttgatttgtttagctgactgtagGTAATGTCGTCCGGTCGGGGGACGTGAGAGCTACGGGGACGAAGGAGCTTGAGATCCCATGTGCTGGCGAGGTGGATTTGCGCAGAGTAGTCGATCAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA