1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
CAACTGAAGAAAAAAAAACGGAAGCAGTTGTTACACACTCTGGGAAAAATCAAGGATGgcaagtaactgttatcatcacatcttcaagttctgcagttgtagcttgaaaacagccgtaatctaaactcgcgttgtatttcaccagggaattaataatg...
species | Physcomitrella patens |
transcript | PP1S99_220V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GNNNNNNNNNCGGAAGCAGTTGTTACACACTCTGGGAAAAATCAAGGATG AGCTCATGCTTCTGGGGTTCATATCCCTTTCCCTCACCGTCTTCCAGTCGAEST: gi|18367261|gb|BJ199343.1|BJ199343
genomic: GAAAAAAAAACGGAAGCAGTTGTTACACACTCTGGGAAAAATCAAGGATGgcaagtaact ... gtgtgttcagAGCTCATGCTTCTGGGGTTCATATCCCTTTCCCTCACCGTCTTCCAGTCGA
EST: GNNNNNNNNNCGGAAGCAGTTGTTACACACTCTGGGAAAAATCAAGGATG AGCTCATGCTTCTGGGGTTCATATCCCTTTCCCTCACCGTCTTCCAGTCGAEST: gi|18372621|gb|BJ204223.1|BJ204223
genomic: GAAAAAAAAACGGAAGCAGTTGTTACACACTCTGGGAAAAATCAAGGATGgcaagtaact ... gtgtgttcagAGCTCATGCTTCTGGGGTTCATATCCCTTTCCCTCACCGTCTTCCAGTCGA
EST: GNNNNNNNNNCGGAAGCAGTTGTTACACACTCTGGGAAAAATCAAGGATG AGCTCATGCTTCTGGGGTTCATATCCCTTTCCCTCACCGTCTTCCAGTCGAEST: gi|18362975|gb|BJ195047.1|BJ195047
genomic: GAAAAAAAAACGGAAGCAGTTGTTACACACTCTGGGAAAAATCAAGGATGgcaagtaact ... gtgtgttcagAGCTCATGCTTCTGGGGTTCATATCCCTTTCCCTCACCGTCTTCCAGTCGA
EST: GNNNNNNNNNCGGAAGCAGTTGTTACACACTCTGGGAAAAATCAAGGATG AGCTCATGCTTCTGGGGTTCATATCCCTTTCCCTCACCGTCTTCCAGTCGAEST: gi|162165453|gb|FC342020.1|FC342020
genomic: GAAAAAAAAACGGAAGCAGTTGTTACACACTCTGGGAAAAATCAAGGATGgcaagtaact ... gtgtgttcagAGCTCATGCTTCTGGGGTTCATATCCCTTTCCCTCACCGTCTTCCAGTCGA
EST: GNNNNNNNNNCGGAAGCAGTTGTTACACACTCTGGGAAAAATCAAGGATG AGCTCATGCTTCTGGGGTTCATATCCCTTTCCCTCACCGTCTTCCAGTCGAEST: gi|162158052|gb|FC334453.1|FC334453
genomic: GAAAAAAAAACGGAAGCAGTTGTTACACACTCTGGGAAAAATCAAGGATGgcaagtaact ... gtgtgttcagAGCTCATGCTTCTGGGGTTCATATCCCTTTCCCTCACCGTCTTCCAGTCGA
EST: GNNNNNNNNNCGGAAGCAGTTGTTACACACTCTGGGAAAAATCAAGGATG AGCTCATGCTTCTGGGGTTCATATCCCTTTCCCTCACCGTCTTCCAGTCGA
genomic: GAAAAAAAAACGGAAGCAGTTGTTACACACTCTGGGAAAAATCAAGGATGgcaagtaact ... gtgtgttcagAGCTCATGCTTCTGGGGTTCATATCCCTTTCCCTCACCGTCTTCCAGTCGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAACTGAAGAAAAAAAAACGGAAGCAGTTGTTACACACTCTGGGAAAAATCAAGGATGgcaagtaactgttatcatcacatcttcaagttctgcagttgtagcttgaaaacagccgtaatctaaactcgcgttgtatttcaccagggaattaataatg
- - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG