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gcagattttcttcactttgtcccacgtcgtatttaaaatgtttgaactgtgccacgttaactatttttcgatgtcagtacttccggttgctatctatctagaagtatctgacgtggagggtggaatcgaatggcagGGGTTGGTTGCTAAGGATAAATTTTACGTCACTTATCATGGGGAAGTCTTAAGCAAATCTATGGAAGAG
species | Physcomitrella patens |
transcript | PP1S99_201V6.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TTATCTGTGACATCAGCATTTACGTGGAGTCGGCTGAAATCGATACGGAG GGGTTGGTTGCTAAGGATAAATTTTACGTCACTTATCATGGGGAAGTCTTAEST: gi|162221878|gb|FC398445.1|FC398445
genomic: TTATCTGTGACATCAGCATTTACGTGGAGTCGGCTGAAATCGATACGGAGgcagattttc ... cgaatggcagGGGTTGGTTGCTAAGGATAAATTTTACGTCACTTATCATGGGGAAGTCTTA
EST: TTATCTGTGACATCAGCATTTACGTGGAGTCGGCTGAAATCGATACGGAG GGGTTGGTTGCTAAGGATAAATTTTACGTCACTTATCATGGGGAAGTCTTAEST: gi|162167067|gb|FC342529.1|FC342529
genomic: TTATCTGTGACATCAGCATTTACGTGGAGTCGGCTGAAATCGATACGGAGgcagattttc ... cgaatggcagGGGTTGGTTGCTAAGGATAAATTTTACGTCACTTATCATGGGGAAGTCTTA
EST: TTATCTGTGACATCAGCATTTACGTGGAGTCGGCTGAAATCGATACGGAG GGGTTGGTTGCTAAGGATAAATTTTACGTCACTTATCATGGGGAAGTCTTAEST: gi|162226649|gb|FC402733.1|FC402733
genomic: TTATCTGTGACATCAGCATTTACGTGGAGTCGGCTGAAATCGATACGGAGgcagattttc ... cgaatggcagGGGTTGGTTGCTAAGGATAAATTTTACGTCACTTATCATGGGGAAGTCTTA
EST: TTATCTGTGACATCAGCATTTACGTGGAGTCGGCTGAAATCGATACGGAG GGGTTGGTTGCTAAGGATAAATTTTACGTCACTTATCATGGGGAAGTCTTAEST: gi|208386153|gb|DC949064.1|DC949064
genomic: TTATCTGTGACATCAGCATTTACGTGGAGTCGGCTGAAATCGATACGGAGgcagattttc ... cgaatggcagGGGTTGGTTGCTAAGGATAAATTTTACGTCACTTATCATGGGGAAGTCTTA
EST: TTATCTGTGACATCAGCATTTACGTGGAGTCGGCTGAAATCGATACGGAG GGGTTGGTTGCTAAGGATAAATTTTACGTCACTTATCATGGGGAAGTCTTAEST: gi|208361835|gb|DC950107.1|DC950107
genomic: TTATCTGTGACATCAGCATTTACGTGGAGTCGGCTGAAATCGATACGGAGgcagattttc ... cgaatggcagGGGTTGGTTGCTAAGGATAAATTTTACGTCACTTATCATGGGGAAGTCTTA
EST: TTATCTGTGACATCAGCATTTACGTGGAGTCGGCTGAAATCGATACGGAG GGGTTGGTTGCTAAGGATAAATTTTACGTCACTTATCATGGGGAAGTCTTAEST: gi|162229328|gb|FC405519.1|FC405519
genomic: TTATCTGTGACATCAGCATTTACGTGGAGTCGGCTGAAATCGATACGGAGgcagattttc ... cgaatggcagGGGTTGGTTGCTAAGGATAAATTTTACGTCACTTATCATGGGGAAGTCTTA
EST: TTATCTGTGACATCAGCATTTACGTGGAGTCGGCTGAAATCGATACGGAG GGGTTGGTTGCTAAGGATAAATTTTACGTCACTTATCATGGGGAAGTCTTAEST: gi|67695217|gb|BJ955450.1|BJ955450
genomic: TTATCTGTGACATCAGCATTTACGTGGAGTCGGCTGAAATCGATACGGAGgcagattttc ... cgaatggcagGGGTTGGTTGCTAAGGATAAATTTTACGTCACTTATCATGGGGAAGTCTTA
EST: TTATCTGTGACATCAGCATTTACGTGGAGTCGGCTGAAATCGATACGGAG GGGTTGGTTGCTAAGGATAAATTTTACGTCACTTATCATGGGGAAGTCTTAEST: gi|162190767|gb|FC367029.1|FC367029
genomic: TTATCTGTGACATCAGCATTTACGTGGAGTCGGCTGAAATCGATACGGAGgcagattttc ... cgaatggcagGGGTTGGTTGCTAAGGATAAATTTTACGTCACTTATCATGGGGAAGTCTTA
EST: TTATCTGTGACATCAGCATTTACGTGGAGTCGGCTGAAATCGATACGGAG GGGTTGGTTGCTAAGGATAAATTTTACGTCACTTATCATGGGGAAGTCTTAEST: gi|162226648|gb|FC402732.1|FC402732
genomic: TTATCTGTGACATCAGCATTTACGTGGAGTCGGCTGAAATCGATACGGAGgcagattttc ... cgaatggcagGGGTTGGTTGCTAAGGATAAATTTTACGTCACTTATCATGGGGAAGTCTTA
EST: TTATCTGTGACATCAGCATTTACGTGGAGTCGGCTGAAATCGATACGGAG GGGTTGGTTGCTAAGGATAAATTTTACGTCACTTATCATGGGGAAGTCTTAEST: gi|162202685|gb|FC379004.1|FC379004
genomic: TTATCTGTGACATCAGCATTTACGTGGAGTCGGCTGAAATCGATACGGAGgcagattttc ... cgaatggcagGGGTTGGTTGCTAAGGATAAATTTTACGTCACTTATCATGGGGAAGTCTTA
EST: TTATCTGTGACATCAGCATTTACGTGGAGTCGGCTGAAATCGATACGGAG GGGTTGGTTGCTAAGGATAAATTTTACGTCACTTATCATGGGGAAGTCTTAEST: gi|162202684|gb|FC379003.1|FC379003
genomic: TTATCTGTGACATCAGCATTTACGTGGAGTCGGCTGAAATCGATACGGAGgcagattttc ... cgaatggcagGGGTTGGTTGCTAAGGATAAATTTTACGTCACTTATCATGGGGAAGTCTTA
EST: TTATCTGTGACATCAGCATTTACGTGGAGTCGGCTGAAATCGATACGGAG GGGTTGGTTGCTAAGGATAAATTTTACGTCACTTATCATGGGGAAGTCTTA
genomic: TTATCTGTGACATCAGCATTTACGTGGAGTCGGCTGAAATCGATACGGAGgcagattttc ... cgaatggcagGGGTTGGTTGCTAAGGATAAATTTTACGTCACTTATCATGGGGAAGTCTTA
tccggttgctatctatctagaagtatctgacgtggagggtggaatcgaatggcagGGGTTGGTTGCTAAGGATAAATTTTACGTCACTTATCATGGGGAAGTCTTAAGCAAATCTATGGAAGAG
atctgac putative branch site (score: 80)
tatctat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcagattttcttcactttgtcccacgtcgtatttaaaatgtttgaactgtgccacgttaactatttttcgatgtcagtacttccggttgctatctatctagaagtatctgacgtggagggtggaatcgaatggcagGGGTTGGTTGCTAAGGATAAATTTTACGTCACTTATCATGGGGAAGTCTTAAGCAAATCTATGGAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA