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GGAGCCAAAGCCGATTGTGCTAATTGATCAGGAGTCGGATGCGGAAGCCACAATTGTGGAGATCAGCTTTGGAGACAGGCTGGGTGCTCTGCTTGATACGgttggttactattttcatcttctgcattacctttcttttggattttggtaaactagaagcgtaagttctctccgtatcttgaattattcaaataaaattg...
species | Physcomitrella patens |
transcript | PP1S99_201V6.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CAGCTTTGGAGACAGGCTGGGTGCTCTGCTTGATACG ATAAAAGCGCTTAAGGACCTGGGACTGAACGTCATCAGGGGAGTAGTTACAEST: gi|208386153|gb|DC949064.1|DC949064
genomic: CAGCTTTGGAGACAGGCTGGGTGCTCTGCTTGATACGgttggttact ... ttttatgcagATAAAAGCGCTTAAGGACCTGGGACTGAACGTCATCAGGGGAGTAGTTACA
EST: CAATTG-GGAGATCAGCTTTGGAGACAGGCTGGGTGCTCTGCTTGATACG ATAAAAGCGCTTAAGGACCTGGGACTGAACGTCATCAGGGGAGTAGTTACAEST: gi|162190768|gb|FC367030.1|FC367030
genomic: CAATTGTGGAGATCAGCTTTGGAGACAGGCTGGGTGCTCTGCTTGATACGgttggttact ... ttttatgcagATAAAAGCGCTTAAGGACCTGGGACTGAACGTCATCAGGGGAGTAGTTACA
EST: CAATTGTGGAGATCAGCTTTGGAGACAGGCTGGGTGCTCTGCTTGATACG ATAAAAGCGCTTAAGGACCTGGGACTGAACGTCATCAGGGGAGTAGTTACAEST: gi|67571853|gb|BJ944677.1|BJ944677
genomic: CAATTGTGGAGATCAGCTTTGGAGACAGGCTGGGTGCTCTGCTTGATACGgttggttact ... ttttatgcagATAAAAGCGCTTAAGGACCTGGGACTGAACGTCATCAGGGGAGTAGTTACA
EST: CAATTGTGGAGATCAGCTTTGGAGACAGGCTGGGTGCTCTGCTTGATACG ATAAAAGCGCTTAAGGACCTGGGACTGAACGTCATCAGGGGAGTAGTTACAEST: gi|162229329|gb|FC405520.1|FC405520
genomic: CAATTGTGGAGATCAGCTTTGGAGACAGGCTGGGTGCTCTGCTTGATACGgttggttact ... ttttatgcagATAAAAGCGCTTAAGGACCTGGGACTGAACGTCATCAGGGGAGTAGTTACA
EST: CAATTGTGGAGATCAGCTTTGGAGACAGGCTGGGTGCTCTGCTTGATACG ATAAAAGCGCTTAAGGACCTGGGACTGAACGTCATCAGGGGAGTAGTTACA
genomic: CAATTGTGGAGATCAGCTTTGGAGACAGGCTGGGTGCTCTGCTTGATACGgttggttact ... ttttatgcagATAAAAGCGCTTAAGGACCTGGGACTGAACGTCATCAGGGGAGTAGTTACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAGCCAAAGCCGATTGTGCTAATTGATCAGGAGTCGGATGCGGAAGCCACAATTGTGGAGATCAGCTTTGGAGACAGGCTGGGTGCTCTGCTTGATACGgttggttactattttcatcttctgcattacctttcttttggattttggtaaactagaagcgtaagttctctccgtatcttgaattattcaaataaaattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caaataaa