1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ggtgaaaccaaaatgtctggcttggatagttctcagttttgcgaaattttcttgtgcgtctgttttgatagcctaactgtgcaacatttgaccctgacagGGATAACAACAAAAAAGTGGAGGATCCTGAGCTGCTGGAAGCCATTCGCCTTACCATCATAAACAACCTGCTTCAGTACCATCCT
species | Physcomitrella patens |
transcript | PP1S99_201V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ACAACAGAGGGTCCCAATTTGCGGCGCAAAAAGTTCTTGGTGACACGCTT GGATAACAACAAAAAAGTGGAGGATCCTGAGCTGCTGGAAGCCATTCGCCTEST: gi|208386153|gb|DC949064.1|DC949064
genomic: ACAACAGAGGGTCCCAATTTGCGGCGCAAAAAGTTCTTGGTGACACGCTTgtatgttgaa ... accctgacagGGATAACAACAAAAAAGTGGAGGATCCTGAGCTGCTGGAAGCCATTCGCCT
EST: ACAACAGAGGGTCCCAATTTGCGGCGCAAAAAGTTCTTGGTGACACGCTT GGATAACAACAAAAAAGTGGAGGATCCTGAGCTGCTGGAAGCCATTCGCCTEST: gi|162190768|gb|FC367030.1|FC367030
genomic: ACAACAGAGGGTCCCAATTTGCGGCGCAAAAAGTTCTTGGTGACACGCTTgtatgttgaa ... accctgacagGGATAACAACAAAAAAGTGGAGGATCCTGAGCTGCTGGAAGCCATTCGCCT
EST: ACAACAGAGGGTCCCAATTTGCGGCGCAAAAAGTTCTTGGTGACACGCTT GGATAACAACAAAAAAGTGGAGGATCCTGAGCTGCTGGAAGCCATTCGCCTEST: gi|208361835|gb|DC950107.1|DC950107
genomic: ACAACAGAGGGTCCCAATTTGCGGCGCAAAAAGTTCTTGGTGACACGCTTgtatgttgaa ... accctgacagGGATAACAACAAAAAAGTGGAGGATCCTGAGCTGCTGGAAGCCATTCGCCT
EST: ACAACAGAGGGTCCCAATTTGCGGCGCAAAAAGTTCTTGGTGACACGCTT GGATAACAACAAAAAAGTGGAGGATCCTGAGCTGCTGGAAGCCATTCGCCTEST: gi|67695217|gb|BJ955450.1|BJ955450
genomic: ACAACAGAGGGTCCCAATTTGCGGCGCAAAAAGTTCTTGGTGACACGCTTgtatgttgaa ... accctgacagGGATAACAACAAAAAAGTGGAGGATCCTGAGCTGCTGGAAGCCATTCGCCT
EST: CGGCGCAAAAAGTTCTTGGTGACACGCTT GGATAACAACAAAAAAGTGGAGGATCCTGAGCTGCTGGAAGCCATTCGCCTEST: gi|162190767|gb|FC367029.1|FC367029
genomic: CGGCGCAAAAAGTTCTTGGTGACACGCTTgtatgttgaa ... accctgacagGGATAACAACAAAAAAGTGGAGGATCCTGAGCTGCTGGAAGCCATTCGCCT
EST: GCAAAAAGTTCTTGGTGACACGCTT GGATAACAACAAAAAAGTGGAGGATCCTGAGCTGCTGGAAGCCATTCGCCTEST: gi|67571853|gb|BJ944677.1|BJ944677
genomic: GCAAAAAGTTCTTGGTGACACGCTTgtatgttgaa ... accctgacagGGATAACAACAAAAAAGTGGAGGATCCTGAGCTGCTGGAAGCCATTCGCCT
EST: ACAACAGAGGGTCCCAATTTGCGGCGCAAAAAGTTCTTGGTGACACGCTT GGATAACAACAAAAAAGTGGAGGATCCTGAGCTGCTGGAAGCCATTCGCCTEST: gi|162226648|gb|FC402732.1|FC402732
genomic: ACAACAGAGGGTCCCAATTTGCGGCGCAAAAAGTTCTTGGTGACACGCTTgtatgttgaa ... accctgacagGGATAACAACAAAAAAGTGGAGGATCCTGAGCTGCTGGAAGCCATTCGCCT
EST: GCGGCGCAAAAAGTTCTTGGTGACACGCTT GGATAACAACAAAAAAGTGGAGGATCCTGAGCTGCTGGAAGCCATTCGCCTEST: gi|162202685|gb|FC379004.1|FC379004
genomic: GCGGCGCAAAAAGTTCTTGGTGACACGCTTgtatgttgaa ... accctgacagGGATAACAACAAAAAAGTGGAGGATCCTGAGCTGCTGGAAGCCATTCGCCT
EST: ACAACAGAGGGTCCCAATTTGCGGCGCAAAAAGTTCTTGGTGACACGCTT GGATAACAACAAAAAAGTGGAGGATCCTGAGCTGCTGGAAGCCATTCGCCTEST: gi|162202684|gb|FC379003.1|FC379003
genomic: ACAACAGAGGGTCCCAATTTGCGGCGCAAAAAGTTCTTGGTGACACGCTTgtatgttgaa ... accctgacagGGATAACAACAAAAAAGTGGAGGATCCTGAGCTGCTGGAAGCCATTCGCCT
EST: ACAACAGAGGGTCCCAATNTGCGGCGCAAAAAGTTCTTGGTGACACGCTT GGATAACAACAAAAAAGTGGAGGATCCTGAGCTGCTGGAAGCCATTCGCCTEST: gi|162229329|gb|FC405520.1|FC405520
genomic: ACAACAGAGGGTCCCAATTTGCGGCGCAAAAAGTTCTTGGTGACACGCTTgtatgttgaa ... accctgacagGGATAACAACAAAAAAGTGGAGGATCCTGAGCTGCTGGAAGCCATTCGCCT
EST: ACAACAGAGGGTCCCAATTTGCGGCGCAAAAAGTTCTTGGTGACACGCTT GGATAACAACAAAAAAGTGGAGGATCCTGAGCTGCTGGAAGCCATTCGCCT
genomic: ACAACAGAGGGTCCCAATTTGCGGCGCAAAAAGTTCTTGGTGACACGCTTgtatgttgaa ... accctgacagGGATAACAACAAAAAAGTGGAGGATCCTGAGCTGCTGGAAGCCATTCGCCT
attttcttgtgcgtctgttttgatagcctaactgtgcaacatttgaccctgacagGGATAACAACAAAAAAGTGGAGGATCCTGAGCTGCTGGAAGCCATTCGCCTTACCATCATAAACAACCTGCTTCAGTACCATCCT
ttttgata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggtgaaaccaaaatgtctggcttggatagttctcagttttgcgaaattttcttgtgcgtctgttttgatagcctaactgtgcaacatttgaccctgacagGGATAACAACAAAAAAGTGGAGGATCCTGAGCTGCTGGAAGCCATTCGCCTTACCATCATAAACAACCTGCTTCAGTACCATCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG