1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gttcgtacgctgaaaattatcttggagctctttcgtttcacttccttttgcatgttattgttcctacatgtgatgttaggagtgagggagctgagaatgagtcggactcttgtgttcgacgcatctccctgagagcagttgcttaacgaacttggatccctgttttttctgtgcagGATATTGAGAAGGAAAAGAAGAGGGCAGAGAATCCTGAAGCAATGGAAGAAGACGAGACTGATGAAGTGTCAGAGATTAAAGCTGCTCACTTTGAGGAGT
species | Physcomitrella patens |
transcript | PP1S99_139V6.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGATTTGTCAGCGAGCTTGCAAATATGCAATCCGTGAAAATATTGAGAAG GATATTGAGAAGGAAAAGAAGAGGGCAGAGAATCCTGAAGCAATGEST: gi|22133162|gb|BQ827582.1|BQ827582
genomic: AGATTTGTCAGCGAGCTTGCAAATATGCAATCCGTGAAAATATTGAGAAGgttcgtacgc ... ttctgtgcagGATATTGAGAAGGAAAAGAAGAGGGCAGAGAATCCTGAAGCAATG
EST: AGATTTGTCAGCGAGCTTGCAAATATGCAATCCGTGAAAATATTGAGAAG GATATTGAGAAGGAAAAGAAGAGGGCAGAGAATCCTGAAGCAATGGAAGAEST: gi|162194288|gb|FC369511.1|FC369511
genomic: AGATTTGTCAGCGAGCTTGCAAATATGCAATCCGTGAAAATATTGAGAAGgttcgtacgc ... ttctgtgcagGATATTGAGAAGGAAAAGAAGAGGGCAGAGAATCCTGAAGCAATGGAAGA
EST: AGATTTGTCAGCGAGCTTGCAAATATGCAATCCGTGAAAATATTGAGAAG GATATTGAGAAGGAAAAGAAGAGGGCAGAGAATCCTGAAGCAATGGAAGAAEST: gi|37841594|gb|BJ599602.1|BJ599602
genomic: AGATTTGTCAGCGAGCTTGCAAATATGCAATCCGTGAAAATATTGAGAAGgttcgtacgc ... ttctgtgcagGATATTGAGAAGGAAAAGAAGAGGGCAGAGAATCCTGAAGCAATGGAAGAA
EST: AGATTTGTCAGCGAGCTTGCAAATATGCAATCCGTGAAAATATTGAGAAG GATATTGAGAAGGAAAAGAAGAGGGCAGAGAATCCTGAAGCAATGGAAGAAEST: gi|162157805|gb|FC334076.1|FC334076
genomic: AGATTTGTCAGCGAGCTTGCAAATATGCAATCCGTGAAAATATTGAGAAGgttcgtacgc ... ttctgtgcagGATATTGAGAAGGAAAAGAAGAGGGCAGAGAATCCTGAAGCAATGGAAGAA
EST: AGATTTGTCAGCGAGCTTGCAAATATGCAATCCGTGAAAATATTGAGAAG GATATTGAGAAGGAAAAGAAGAGGGCAGAGAATCEST: gi|22491974|gb|BU051897.1|BU051897
genomic: AGATTTGTCAGCGAGCTTGCAAATATGCAATCCGTGAAAATATTGAGAAGgttcgtacgc ... ttctgtgcagGATATTGAGAAGGAAAAGAAGAGGGCAGAGAATC
EST: AGATTTGTCAGCGAGCTTGCAAATATGCAATCCGTGAAAATATTGAGAAG GATATTGAGAAGGAAAAGAAGAGGGCAGAGAATCCTGAAGCAATGGAAGAAEST: gi|162177749|gb|FC354583.1|FC354583
genomic: AGATTTGTCAGCGAGCTTGCAAATATGCAATCCGTGAAAATATTGAGAAGgttcgtacgc ... ttctgtgcagGATATTGAGAAGGAAAAGAAGAGGGCAGAGAATCCTGAAGCAATGGAAGAA
EST: AGATTTGTCAGCGAGCTTGCANATATGCAATCCGTGAAAATATTGAGAAG GATATTGAGAAGGAAAAGAAGAGGGCAGEST: gi|37823753|gb|BJ581819.1|BJ581819
genomic: AGATTTGTCAGCGAGCTTGCAAATATGCAATCCGTGAAAATATTGAGAAGgttcgtacgc ... ttctgtgcagGATATTGAGAAGGAAAAGAAGAGGGCAG
EST: AGATTTGTCAGCGAGCTTGCAAATATGCAATCCGTGAAAATATTGAGAAG GATATTGAGAAGGAAAAGAAGAGGGCAGAGAATCCTGAAGCAATGGAAGAAEST: gi|162152153|gb|FC328743.1|FC328743
genomic: AGATTTGTCAGCGAGCTTGCAAATATGCAATCCGTGAAAATATTGAGAAGgttcgtacgc ... ttctgtgcagGATATTGAGAAGGAAAAGAAGAGGGCAGAGAATCCTGAAGCAATGGAAGAA
EST: AAATATTGAGAAG GATATTGAGAAGGAAAAGAAGAGGGCAGAGAATCCTGAAGCAATGGAAGAAEST: gi|162157804|gb|FC334075.1|FC334075
genomic: AAATATTGAGAAGgttcgtacgc ... ttctgtgcagGATATTGAGAAGGAAAAGAAGAGGGCAGAGAATCCTGAAGCAATGGAAGAA
EST: AGATTTGTCAGCGAGCTTGCAAATATGCAATCCGTGAAAATATTGAGAAG GATATTGAGAAGGAAAAGAAGAGGGCAGAGAATCCTGAAGCAATGGAAGAA
genomic: AGATTTGTCAGCGAGCTTGCAAATATGCAATCCGTGAAAATATTGAGAAGgttcgtacgc ... ttctgtgcagGATATTGAGAAGGAAAAGAAGAGGGCAGAGAATCCTGAAGCAATGGAAGAA
catctccctgagagcagttgcttaacgaacttggatccctgttttttctgtgcagGATATTGAGAAGGAAAAGAAGAGGGCAGAGAATCCTGAAGCAATGGAAGAAGACGAGACTGATGAAGTGTCAGAGATTAAAGCTGCTCACTTTGAGGAGT
gcttaac putative branch site (score: 3)
tccctgttttttctgt putative PPT
tgtttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcgtacgctgaaaattatcttggagctctttcgtttcacttccttttgcatgttattgttcctacatgtgatgttaggagtgagggagctgagaatgagtcggactcttgtgttcgacgcatctccctgagagcagttgcttaacgaacttggatccctgttttttctgtgcagGATATTGAGAAGGAAAAGAAGAGGGCAGAGAATCCTGAAGCAATGGAAGAAGACGAGACTGATGAAGTGTCAGAGATTAAAGCTGCTCACTTTGAGGAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG