1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AAGCAATCCTTCTGCACTTCGAGAGACGGTTGTGGAGGTGCCCAATGTCACCTGGGAAGATGTCGGTGGTCTCGATAACGTCAAGCGGGAGCTCCAAGAGgtatattctttcctcagttgtcgtttttttctttctttcttcttaaaagctcttgccttcattggttgtatccacctcccatatgttgaagttaagctatttgtgcacttcgctgaccttgttttttttttttttacag
species | Physcomitrella patens |
transcript | PP1S99_139V6.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CCTGGGAAGATGTCGGTGGTCTCGATAACGTCAAGCGGGAGCTCCAAGAG ACTGTGCAATATCCTGTGGAGCATCCAGEST: gi|162233392|gb|FC410202.1|FC410202
genomic: CCTGGGAAGATGTCGGTGGTCTCGATAACGTCAAGCGGGAGCTCCAAGAGgtatattctt ... ttttttacagACTGTGCAATATCCTGTGGAGCATCCAG
EST: CCTGGGAAGATGTCGGTGGTCTCGATAACGTCAAGCGGGAGCTCCAAGAG ACTGTGCAATATCCTGTGGAGCATCCAGAGAAGTTCGAGAAGTTTGGTATGEST: gi|162177749|gb|FC354583.1|FC354583
genomic: CCTGGGAAGATGTCGGTGGTCTCGATAACGTCAAGCGGGAGCTCCAAGAGgtatattctt ... ttttttacagACTGTGCAATATCCTGTGGAGCATCCAGAGAAGTTCGAGAAGTTTGGTATG
EST: CCTGGGAAGATGTCGGTGGTCTCGATAACGTCAAGCGGGAGCTCCAAGAG ACTGTGCAATATCCTGTGGAGCATCCAGAGAAGTTCGAGAAGTTTGGTATGEST: gi|100391180|gb|BY971527.1|BY971527
genomic: CCTGGGAAGATGTCGGTGGTCTCGATAACGTCAAGCGGGAGCTCCAAGAGgtatattctt ... ttttttacagACTGTGCAATATCCTGTGGAGCATCCAGAGAAGTTCGAGAAGTTTGGTATG
EST: CCTGGGAAGATGTCGGTGGTCTCGATAACGTCAAGCGGGAGCTCCAAGAG ACTGTGCAATATCCTGTGGAGCATCCAGAGAAGTTCGAGAAGTTTGGTATG
genomic: CCTGGGAAGATGTCGGTGGTCTCGATAACGTCAAGCGGGAGCTCCAAGAGgtatattctt ... ttttttacagACTGTGCAATATCCTGTGGAGCATCCAGAGAAGTTCGAGAAGTTTGGTATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGCAATCCTTCTGCACTTCGAGAGACGGTTGTGGAGGTGCCCAATGTCACCTGGGAAGATGTCGGTGGTCTCGATAACGTCAAGCGGGAGCTCCAAGAGgtatattctttcctcagttgtcgtttttttctttctttcttcttaaaagctcttgccttcattggttgtatccacctcccatatgttgaagttaagctatttgtgcacttcgctgaccttgttttttttttttttacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT